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There is growing interest in the automated extraction of relevant information from clinical dialogues. However, it is difficult to collect and construct large annotated resources for clinical dialogue tasks. Recent developments in natural…

Computation and Language · Computer Science 2022-06-07 Zhengyuan Liu , Pavitra Krishnaswamy , Nancy F. Chen

The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…

Digital Libraries · Computer Science 2017-10-25 Jessica Perrie , Yanqi Hao , Zack Hayat , Recep Colak , Kelly Lyons , Shankar Vembu , Sam Molyneux

Keeping track of the ever-increasing body of scientific literature is an escalating challenge. We present PubTree a hierarchical search tool that efficiently searches the PubMed/MEDLINE dataset based upon a decision tree constructed using…

Information Retrieval · Computer Science 2017-02-28 William Rowe , Paul D. Dobson , Bede Constantinides , Mark Platt

Research organisations and their research outputs have been growing considerably in the past decades. This large body of knowledge attracts various stakeholders, e.g., for knowledge sharing, technology transfer, or potential collaborations.…

Digital Libraries · Computer Science 2024-04-05 Gautam Kishore Shahi , Oliver Hummel

Literature search is arguably one of the most important phases of the academic and non-academic research. The increase in the number of published papers each year makes manual search inefficient and furthermore insufficient. Hence,…

Information Retrieval · Computer Science 2012-09-27 Onur Küçüktunç , Erik Saule , Kamer Kaya , Ümit V. Çatalyürek

Abstracts derived from biomedical literature possess distinct domain-specific characteristics, including specialised writing styles and biomedical terminologies, which necessitate a deep understanding of the related literature. As a result,…

Computation and Language · Computer Science 2023-10-25 Chen Tang , Shun Wang , Tomas Goldsack , Chenghua Lin

This paper addresses cross-domain visual search, where visual queries retrieve category samples from a different domain. For example, we may want to sketch an airplane and retrieve photographs of airplanes. Despite considerable progress,…

Computer Vision and Pattern Recognition · Computer Science 2020-07-29 William Thong , Pascal Mettes , Cees G. M. Snoek

This paper describes an ongoing multi-scale visual analytics approach for exploring and analyzing biomedical knowledge at scale.We utilize global and local views, hierarchical and flow-based graph layouts, multi-faceted search, neighborhood…

Human-Computer Interaction · Computer Science 2021-10-22 Fahd Husain , Rosa Romero-Gomez , Emily Kuang , Dario Segura , Adamo Carolli , Lai Chung Liu , Manfred Cheung , Yohann Paris

The exponential growth of biomedical texts such as biomedical literature and electronic health records (EHRs), poses a significant challenge for clinicians and researchers to access clinical information efficiently. To tackle this…

Computation and Language · Computer Science 2023-07-17 Qianqian Xie , Zheheng Luo , Benyou Wang , Sophia Ananiadou

The pandemic of coronavirus disease 2019 (COVID-19) has lead to a global public health crisis spreading hundreds of countries. With the continuous growth of new infections, developing automated tools for COVID-19 identification with CT…

Image and Video Processing · Electrical Eng. & Systems 2020-09-17 Zhao Wang , Quande Liu , Qi Dou

Since late 2019, COVID-19 has quickly emerged as the newest biomedical domain, resulting in a surge of new information. As with other emergent domains, the discussion surrounding the topic has been rapidly changing, leading to the spread of…

Computation and Language · Computer Science 2021-10-15 Sharon Levy , Kevin Mo , Wenhan Xiong , William Yang Wang

The world has seen in 2020 an unprecedented global outbreak of SARS-CoV-2, a new strain of coronavirus, causing the COVID-19 pandemic, and radically changing our lives and work conditions. Many scientists are working tirelessly to find a…

Information Retrieval · Computer Science 2020-05-18 Pierre Le Bras , Azimeh Gharavi , David A. Robb , Ana F. Vidal , Stefano Padilla , Mike J. Chantler

Vision-language models have become increasingly powerful for tasks that require an understanding of both visual and linguistic elements, bridging the gap between these modalities. In the context of multimodal clinical AI, there is a growing…

Computation and Language · Computer Science 2024-04-30 Masoud Monajatipoor , Zi-Yi Dou , Aichi Chien , Nanyun Peng , Kai-Wei Chang

During the COVID-19 pandemic, the scientific literature related to SARS-COV-2 has been growing dramatically, both in terms of the number of publications and of its impact on people's life. This literature encompasses a varied set of…

Digital Libraries · Computer Science 2021-12-06 Giorgia Minello , Carlo R. M. A. Santagiustina , Massimo Warglien

A visual-language model (VLM) pre-trained on natural images and text pairs poses a significant barrier when applied to medical contexts due to domain shift. Yet, adapting or fine-tuning these VLMs for medical use presents considerable…

Computer Vision and Pattern Recognition · Computer Science 2024-05-31 Aisha Urooj Khan , John Garrett , Tyler Bradshaw , Lonie Salkowski , Jiwoong Jason Jeong , Amara Tariq , Imon Banerjee

The medical domain is often subject to information overload. The digitization of healthcare, constant updates to online medical repositories, and increasing availability of biomedical datasets make it challenging to effectively analyze the…

Machine Learning · Computer Science 2022-08-03 Ozan Ozyegen , Devika Kabe , Mucahit Cevik

Multi-modal data abounds in biomedicine, such as radiology images and reports. Interpreting this data at scale is essential for improving clinical care and accelerating clinical research. Biomedical text with its complex semantics poses…

Objective: To discover candidate drugs to repurpose for COVID-19 using literature-derived knowledge and knowledge graph completion methods. Methods: We propose a novel, integrative, and neural network-based literature-based discovery (LBD)…

Computation and Language · Computer Science 2021-02-10 Rui Zhang , Dimitar Hristovski , Dalton Schutte , Andrej Kastrin , Marcelo Fiszman , Halil Kilicoglu

Healthcare data is increasing in size at an unprecedented speed with much attention on big data analysis and Artificial Intelligence application for quality assurance, clinical training, severity triaging, and decision support. Radiology is…

Information Retrieval · Computer Science 2020-07-08 Ningcheng Li , Guy Maresh , Maxwell Cretcher , Khashayar Farsad , Ramsey Al-Hakim , John Kaufman , Judy Gichoya

COVID-19 is one of the most important topic these days, specifically on search engines and news. While fake news are easily shared, scientific papers are reliable sources where information can be extracted. With about 24,000 scientific…

Digital Libraries · Computer Science 2020-05-04 Bernard Dousset , Josiane Mothe