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Masked autoencoder (MAE) is a promising self-supervised pre-training technique that can improve the representation learning of a neural network without human intervention. However, applying MAE directly to volumetric medical images poses…

Computer Vision and Pattern Recognition · Computer Science 2023-08-24 Jia-Xin Zhuang , Luyang Luo , Hao Chen

Increasing volume of Electronic Health Records (EHR) in recent years provides great opportunities for data scientists to collaborate on different aspects of healthcare research by applying advanced analytics to these EHR clinical data. A…

Machine Learning · Computer Science 2019-09-23 Najibesadat Sadati , Milad Zafar Nezhad , Ratna Babu Chinnam , Dongxiao Zhu

Electronic Health Records (EHR) have become a valuable resource for a wide range of predictive tasks in healthcare. However, existing approaches have largely focused on inter-visit event predictions, overlooking the importance of…

Machine Learning · Computer Science 2025-04-01 Yuyang Liang , Yankai Chen , Yixiang Fang , Laks V. S. Lakshmanan , Chenhao Ma

In this thesis, we develop methods to enhance the interpretability of recent representation learning techniques in natural language processing (NLP) while accounting for the unavailability of annotated data. We choose to leverage…

Computation and Language · Computer Science 2023-05-05 Ghazi Felhi

Unsupervised anomaly detection and localization is a crucial task as it is impossible to collect and label all possible anomalies. Many studies have emphasized the importance of integrating local and global information to achieve accurate…

Computer Vision and Pattern Recognition · Computer Science 2025-04-03 E. Mathian , H. Liu , L. Fernandez-Cuesta , D. Samaras , M. Foll , L. Chen

Unsupervised disentangled representation learning from the unlabelled audio data, and high fidelity audio generation have become two linchpins in the machine learning research fields. However, the representation learned from an unsupervised…

Audio and Speech Processing · Electrical Eng. & Systems 2020-10-20 Kazi Nazmul Haque , Rajib Rana , Björn W Schuller

Data reconstruction is a widely used pre-training task to learn the generalized features for many downstream tasks. Although reconstruction tasks have been applied to neural signal completion and denoising, neural signal reconstruction is…

Neurons and Cognition · Quantitative Biology 2024-07-02 Youzhi Qu , Junfeng Xia , Xinyao Jian , Wendu Li , Kaining Peng , Zhichao Liang , Haiyan Wu , Quanying Liu

International Classification of Disease (ICD) coding procedure which refers to tagging medical notes with diagnosis codes has been shown to be effective and crucial to the billing system in medical sector. Currently, ICD codes are assigned…

Computation and Language · Computer Science 2021-04-22 Biplob Biswas , Thai-Hoang Pham , Ping Zhang

Generative modeling and self-supervised learning have in recent years made great strides towards learning from data in a completely unsupervised way. There is still however an open area of investigation into guiding a neural network to…

Machine Learning · Computer Science 2023-05-17 Vaishnavi Patil , Matthew Evanusa , Joseph JaJa

Risk adjustment has become an increasingly important tool in healthcare. It has been extensively applied to payment adjustment for health plans to reflect the expected cost of providing coverage for members. Risk adjustment models are…

Machine Learning · Computer Science 2019-07-16 Qiu-Yue Zhong , Andrew H. Fairless , Jasmine M. McCammon , Farbod Rahmanian

Transformer models have become state-of-the-art in decoding stimuli and behavior from neural activity, significantly advancing neuroscience research. Yet greater transparency in their decision-making processes would substantially enhance…

Quantitative Methods · Quantitative Biology 2025-06-18 Laurence Freeman , Philip Shamash , Vinam Arora , Caswell Barry , Tiago Branco , Eva Dyer

Early warning of intraoperative adverse events plays a vital role in reducing surgical risk and improving patient safety. While deep learning has shown promise in predicting the single adverse event, several key challenges remain:…

Machine Learning · Computer Science 2026-04-28 Xueyao Wang , Xiuding Cai , Honglin Shang , Yaoyao Zhu , Yu Yao

We propose Mixed-Panels-Transformer Encoder (MPTE), a novel framework for estimating factor models in panel datasets with mixed frequencies and nonlinear signals. Traditional factor models rely on linear signal extraction and require…

Econometrics · Economics 2026-01-26 Alessio Brini , Ekaterina Seregina

We propose a masked self-supervised learning framework, called BRepMAE, for automatically extracting a valuable representation of the input computer-aided design (CAD) model to recognize its machining features. Representation learning is…

Graphics · Computer Science 2026-02-27 Can Yao , Kang Wu , Zuheng Zheng , Siyuan Xing , Xiao-Ming Fu

Self-supervised learning has attracted increasing attention as it learns data-driven representation from data without annotations. Vision transformer-based autoencoder (ViT-AE) by He et al. (2021) is a recent self-supervised learning…

Computer Vision and Pattern Recognition · Computer Science 2023-05-17 Chinmay Prabhakar , Hongwei Bran Li , Jiancheng Yang , Suprosana Shit , Benedikt Wiestler , Bjoern Menze

Unsupervised learning can leverage large-scale data sources without the need for annotations. In this context, deep learning-based autoencoders have shown great potential in detecting anomalies in medical images. However, especially…

Image and Video Processing · Electrical Eng. & Systems 2020-01-03 David Zimmerer , Simon Kohl , Jens Petersen , Fabian Isensee , Klaus Maier-Hein

Recent advances in representation learning have successfully leveraged the underlying domain-specific structure of data across various fields. However, representing diverse and complex entities stored in tabular format within a latent space…

Machine Learning · Computer Science 2025-02-05 Jan Henrik Bertrand , David B. Hoffmann , Jacopo Pio Gargano , Laurent Mombaerts , Jonathan Taws

A data-driven framework is proposed towards the end of predictive modeling of complex spatio-temporal dynamics, leveraging nested non-linear manifolds. Three levels of neural networks are used, with the goal of predicting the future state…

Computational Physics · Physics 2020-09-14 Jiayang Xu , Karthik Duraisamy

We propose a multi-resolution convolutional autoencoder (MrCAE) architecture that integrates and leverages three highly successful mathematical architectures: (i) multigrid methods, (ii) convolutional autoencoders and (iii) transfer…

Machine Learning · Computer Science 2020-04-13 Yuying Liu , Colin Ponce , Steven L. Brunton , J. Nathan Kutz

We show that unsupervised machine learning can be used to learn physical and chemical transformation pathways from the observational microscopic data, as demonstrated for atomically resolved images in Scanning Transmission Electron…