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An oritatami system (OS) is a theoretical model of self-assembly via co-transcriptional folding. It consists of a growing chain of beads which can form bonds with each other as they are transcribed. During the transcription process, the…

Data Structures and Algorithms · Computer Science 2018-07-16 Erik D. Demaine , Jacob Hendricks , Meagan Olsen , Matthew J. Patitz , Trent A. Rogers , Nicolas Schabanel , Shinnosuke Seki , Hadley Thomas

Solving mazes is not just a fun pastime. Mazes are prototype models in graph theory, topology, robotics, traffic optimization, psychology, and in many other areas of science and technology. However, when maze complexity increases their…

Mesoscale and Nanoscale Physics · Physics 2011-10-17 Yuriy V. Pershin , Massimiliano Di Ventra

This paper proposes Bayesian mosaic, a parallelizable composite posterior, for scalable Bayesian inference on a broad class of multivariate discrete data models. Sampling is embarrassingly parallel since Bayesian mosaic is a multiplication…

Methodology · Statistics 2018-04-03 Ye Wang , David Dunson

Microstructural geometry plays a critical role in the response of heterogeneous materials. Consequently, methods for generating microstructural samples are increasingly crucial to advanced numerical analyses. We extend Sonon et al.'s…

Computational Geometry · Computer Science 2020-03-13 Martin Doškář , Jan Zeman , Daniel Rypl , Jan Novák

We study a random aggregation process involving rectangular clusters. In each aggregation event, two rectangles are chosen at random and if they have a compatible side, either vertical or horizontal, they merge along that side to form a…

Statistical Mechanics · Physics 2018-10-17 D. S. Ben-Naim , E. Ben-Naim , P. L. Krapivsky

This paper presents a detailed symbolic approach to the study of self-similar tilings. It uses properties of addresses associated with graph-directed iterated function systems to establish conjugacy properties of tiling spaces. Tiles may be…

Dynamical Systems · Mathematics 2020-11-30 Michael F. Barnsley , Louisa F. Barnsley , Andrew Vince

Modern AI workloads rely heavily on optimized computing kernels for both training and inference. These AI kernels follow well-defined data-flow patterns, such as moving tiles between DRAM and SRAM and performing a sequence of computations…

Machine Learning · Computer Science 2025-04-29 Lei Wang , Yu Cheng , Yining Shi , Zhengju Tang , Zhiwen Mo , Wenhao Xie , Lingxiao Ma , Yuqing Xia , Jilong Xue , Fan Yang , Zhi Yang

Patterned self-assembly is a process whereby coloured tiles self-assemble to build a rectangular coloured pattern. We propose self-assembly (SA) hypergraph automata as an automata-theoretic model for patterned self-assembly. We investigate…

Discrete Mathematics · Computer Science 2013-02-13 Lila Kari , Steffen Kopecki , Amirhossein Simjour

We show that model molecules with particular rotational symmetries can self-assemble into network structures equivalent to rhombus tilings. This assembly happens in an emergent way, in the sense that molecules spontaneously select irregular…

Statistical Mechanics · Physics 2015-03-25 Stephen Whitelam , Isaac Tamblyn , Juan P. Garrahan , Peter H. Beton

We count tilings of a rectangle of integer sides m-1 and n-1 by a special set of tiles. The result is obtained fron the study of the kernel of the adjacency matrix of an n x n rectangular graph of Z x Z.

Combinatorics · Mathematics 2007-05-23 Carlos Tomei , Tania Vieira

Parity compilation is the challenge of laying out the required constraints for the parity mapping in a local way. We present the first constructive compilation algorithm for the parity architecture using plaquettes for arbitrary…

Quantum Physics · Physics 2025-12-01 Roeland ter Hoeven , Benjamin E. Niehoff , Sagar Sudhir Kale , Wolfgang Lechner

Discrete tomography deals with reconstructing finite spatial objects from lower dimensional projections and has applications for example in timetable design. In this paper we consider the problem of reconstructing a tile packing from its…

Computational Complexity · Computer Science 2010-12-22 Marek Chrobak , Christoph Durr , Flavio Guinez , Antoni Lozano , Nguyen Kim Thang

Given a graph $G$ we consider sequentially placing dimers on it, namely choosing a maximal independent subset of edges, i.e. edges that do not share common vertices. We study the number of vertices that do not belong to any edge found in…

Probability · Mathematics 2018-08-21 Jacob J. Kagan

Given a maze populated with different objects, one may task a robot with a sequential goal completion task, e.g. 1) pick up a key then 2) unlock the door then 3) unlock the treasure chest. A typical machine learning (ML) solution would…

Neural and Evolutionary Computing · Computer Science 2024-05-01 Nathan McDonald

Self-assembled monolayers of microparticles encoding Archimedean and non-regular tessellations promise unprecedented structure-property relationships for a wide spectrum of applications in fields ranging from optoelectronics to surface…

To cope with the high requirements during the computation of semantic segmentations of earth observation imagery, current state-of-the-art pipelines divide the corresponding data into smaller images. Existing methods and benchmark datasets…

Computer Vision and Pattern Recognition · Computer Science 2023-06-08 Sebastian Bullinger , Florian Fervers , Christoph Bodensteiner , Michael Arens

As computers get faster, researchers -- not hardware or algorithms -- become the bottleneck in scientific discovery. Computational study of colloidal self-assembly is one area that is keenly affected: even after computers generate massive…

Soft Condensed Matter · Physics 2018-03-28 Matthew Spellings , Sharon C Glotzer

Binary Neural Networks (BNNs) enable efficient deep learning by saving on storage and computational costs. However, as the size of neural networks continues to grow, meeting computational requirements remains a challenge. In this work, we…

Machine Learning · Computer Science 2024-07-18 Matt Gorbett , Hossein Shirazi , Indrakshi Ray

Let $A$ be an expanding matrix on ${\Bbb R}^s$ with integral entries. A fundamental question in the fractal tiling theory is to understand the structure of the digit set ${\mathcal D}\subset{\Bbb Z}^s$ so that the integral self-affine set…

Combinatorics · Mathematics 2013-05-03 Chun-Kit Lai , Ka-Sing Lau , Hui Rao

Neuromorphic computing with crossbar arrays has emerged as a promising alternative to improve computing efficiency for machine learning. Previous work has focused on implementing crossbar arrays to perform basic mathematical operations.…

Machine Learning · Computer Science 2024-11-08 W. Haensch