Related papers: Small tile sets that compute while solving mazes
The observation by Ke et al. [Science 338, 1177 (2012)] that large numbers of short, pre-designed DNA strands can assemble into three-dimensional target structures came as a great surprise, as no colloidal self-assembling system has ever…
We discuss the problem of counting certain LEGO structures, primarily those comprising parallel $w \times 1$ tiles. These can be combined, as a single LEGO structure, by interlocking the tiles. %Alternatively, if the interlocking condition…
In the field of algorithmic self-assembly, a long-standing unproven conjecture has been that of the NP-hardness of binary pattern tile set synthesis (2-PATS). The $k$-PATS problem is that of designing a tile assembly system with the…
We present an active tile assembly model which extends Winfree's abstract tile assembly model to tiles that are capable of transmitting and receiving binding site activation signals. In addition, we introduce a mathematical framework to…
Using logic gates is the traditional way of designing logic circuits. However, most of the minimization algorithms concern a limited set of gates (complete sets), like sum of products, exclusive-or sum of products, NAND gates, NOR gates…
Let $M$ be a $3\times 3$ integer matrix which is expanding in the sense that each of its eigenvalues is greater than $1$ in modulus and let $\mathcal{D} \subset \mathbb{Z}^3$ be a digit set containing $|\det M|$ elements. Then the unique…
Ordered nanoarrays, i.e. regular patterns of quantum structures at the nanometre scale, have recently been synthesized in a wide range of systems. Here I explore a possible route to technological exploitation: assuming a simple form of…
This paper provides a bridge between the classical tiling theory and the complex neighborhood self-assembling situations that exist in practice. The neighborhood of a position in the plane is the set of coordinates which are considered…
The Tile Assembly Model is a Turing universal model that Winfree introduced in order to study the nanoscale self-assembly of complex (typically aperiodic) DNA crystals. Winfree exhibited a self-assembly that tiles the first quadrant of the…
DNA nanoparticles with three-fold coordination have been observed to self-assemble in experiment into a network equivalent to the hexagonal (6.6.6) tiling, and a network equivalent to the 4.8.8 Archimedean tiling. Both networks are built…
Given an initial family of sets, we may take unions, intersections and complements of the sets contained in this family in order to form a new collection of sets; our construction process is done recursively until we obtain the last family.…
A finite set of integers $A$ tiles the integers by translations if $\mathbb{Z}$ can be covered by pairwise disjoint translated copies of $A$. Restricting attention to one tiling period, we have $A\oplus B=\mathbb{Z}_M$ for some…
Inspired by recent successes using single-stranded DNA tiles to produce complex structures, we develop a two-step coarse-graining approach that uses detailed thermodynamic calculations with oxDNA, a nucleotide-based model of DNA, to…
We consider staged self-assembly systems, in which square-shaped tiles can be added to bins in several stages. Within these bins, the tiles may connect to each other, depending on the glue types of their edges. Previous work by Demaine et…
The study of tilings is a major problem in many mathematical instances, which is studied in two main different approaches: when considering the existence (or obstructions to the existence) of a tiling with a given tile and the other…
Working in Winfree's abstract tile assembly model, we show that a constant-size tile assembly system can be programmed through relative tile concentrations to build an n x n square with high probability, for any sufficiently large n. This…
In this paper, we prove that if a finite number of rectangles, every of which has at least one integer side, perfectly tile a big rectangle then there exists a strategy which reduces the number of these tiles (rectangles) without violating…
We describe a computational model for studying the complexity of self-assembled structures with active molecular components. Our model captures notions of growth and movement ubiquitous in biological systems. The model is inspired by…
We study the computational complexity of the recently proposed nubot model of molecular-scale self-assembly. The model generalises asynchronous cellular automata to have non-local movement where large assemblies of molecules can be pushed…
Mining and exploring databases should provide users with knowledge and new insights. Tiles of data strive to unveil true underlying structure and distinguish valuable information from various kinds of noise. We propose a novel Boolean…