Related papers: Fluid flow in the sarcomere
The lattice Boltzmann method has been successfully applied for the simulation of flow through porous media in the creeping regime. Its technical properties, namely discretization, straightforward implementation and parallelization, are…
Within cells, vesicles and proteins are actively transported several micrometers along the cytoskeletal filaments. The transport along microtubules is propelled by dynein and kinesin motors, which carry the cargo in opposite directions.…
In cells and in vitro assays the number of motor proteins involved in biological transport processes is far from being unlimited. The cytoskeletal binding sites are in contact with the same finite reservoir of motors (either the cytosol or…
We study the dynamics of a dilute solution of rigid rodlike polymers in a viscous fluid at low Reynolds number by means of numerical simulations of a simple rheological model. We show that the rotational dynamics of polymers destabilizes…
Recent results suggest that flow-based algorithms may provide efficient sampling of field distributions for lattice field theory applications, such as studies of quantum chromodynamics and the Schwinger model. In this work, we provide a…
Starting from known kinematic picture for plasticity, we derive a set of dynamical equations describing plastic flow in a Lagrangian formulation. Our derivation is a natural and a straightforward extension of simple fluids, elastic and…
We study a model of cell motility where the condition of optimal trade-off between performance and metabolic cost can be made precise. In this model a steadily crawling fragment is represented by a layer of active gel placed on a frictional…
Mechanical characteristics of single biological cells are used to identify and possibly leverage interesting differences among cells or cell populations. Fluidity---hysteresivity normalized to the extremes of an elastic solid or a viscous…
We present the results of magnetization and magneto-transport measurements in the superconducting state of an as-cast Nb$_{75}$Zr$_{25}$ alloy. We also report the careful investigation of the microstructure of our sample at various length…
We introduce a coupled system of PDEs for the modeling of the fluid-fluid and fluid-solid interaction in a poroelastic material with a single static fracture. The fluid flow in the fracture is modeled by a lower-dimensional Darcy equation,…
While fluids near a solid surface are at the core of applications in energy storage/conversion, electrochemistry/electrowetting and adsorption/catalysis, their nanoscale behavior remains only partially deciphered. Beyond conventional…
Topology optimization offers optimal material layouts, enabling automation in the design of devices. Given the recent advances in computer technology and additive manufacturing, topology optimization is increasingly being used to design…
Structures formed by fused filament fabrication are often substantially weaker than those made with conventional techniques, and fail at the welds between successive layers. One factor that may influence strength is flow-induced alignment…
Biofilament-motor protein complexes are ubiquitous in biology and drive the transport of cargo vital for many fundamental cellular processes. As they move, motor proteins exert compressive forces on the filaments to which they are attached,…
An overarching challenge in rheology is to develop constitutive models for complex fluids for which we lack accurate first principles theory. A further challenge is that most experiments probing dynamical structure and rheology do so only…
Gyrotactic algae are bottom heavy, motile cells whose swimming direction is determined by a balance between a buoyancy torque directing them upwards and fluid velocity gradients. Gyrotaxis has, in recent years, become a paradigmatic model…
A living cell actively generates traction forces on its environment with its actin cytoskeleton. These forces deform the cell elastic substrate which, in turn, affects the traction forces exerted by the cell and can consequently modify the…
Elastic confinements play an important role in many soft matter systems and affect the transport properties of suspended particles in viscous flow. On the basis of low-Reynolds-number hydrodynamics, we present an analytical theory of the…
We apply lattice Boltzmann methods to study the relaxation of the velocity profile in binary fluids under shear during spinodal decomposition. In simple fluids, when a shear flow is applied on the boundaries of the system, the time required…
It is shown that lattice kinetic theory based on short-lived quasiparticles proves very effective in simulating the complex dynamics of strongly interacting fluids (SIF). In particular, it is pointed out that the shear viscosity of lattice…