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DNA sequencing, especially of microbial genomes and metagenomes, has been at the core of recent research advances in large-scale comparative genomics. The data deluge has resulted in exponential growth in genomic datasets over the past…

Feature selection is a combinatorial optimization problem that is NP-hard. Conventional approaches often employ heuristic or greedy strategies, which are prone to premature convergence and may fail to capture subtle yet informative…

Machine Learning · Computer Science 2025-10-22 Yusi Fan , Tian Wang , Zhiying Yan , Chang Liu , Qiong Zhou , Qi Lu , Zhehao Guo , Ziqi Deng , Wenyu Zhu , Ruochi Zhang , Fengfeng Zhou

In the recent years, heterogeneous machine learning accelerators have become of significant interest in science, engineering and industry. The major processing speed bottlenecks in these platforms come from (a) an electronic data…

Optics · Physics 2022-08-25 Maria Solyanik-Gorgone , Behrouz Movahhed , Volker J Sorger

Bloom and cuckoo filters provide fast approximate set membership while using little memory. Engineers use them to avoid expensive disk and network accesses. The recently introduced xor filters can be faster and smaller than Bloom and cuckoo…

Data Structures and Algorithms · Computer Science 2022-03-15 Thomas Mueller Graf , Daniel Lemire

Matrix factorization (MF) is a simple collaborative filtering technique that achieves superior recommendation accuracy by decomposing the user-item interaction matrix into user and item latent matrices. Because the model typically learns…

Information Retrieval · Computer Science 2024-03-11 Kai Sugahara , Kazushi Okamoto

We present a simple and provably optimal non-adaptive cell probe data structure for the static dictionary problem. Our data structure supports storing a set of n key-value pairs from [u]x[u] using s words of space and answering key lookup…

Data Structures and Algorithms · Computer Science 2024-04-22 Kasper Green Larsen , Rasmus Pagh , Giuseppe Persiano , Toniann Pitassi , Kevin Yeo , Or Zamir

The abelian pattern matching problem consists in finding all substrings of a text which are permutations of a given pattern. This problem finds application in many areas and can be solved in linear time by a naive sliding window approach.…

Data Structures and Algorithms · Computer Science 2018-03-08 Simone Faro , Arianna Pavone

Real-world datasets inevitably contain biases that arise from different sources or conditions during data collection. Consequently, such inconsistency itself acts as a confounding factor that disturbs the cluster analysis. Existing methods…

Machine Learning · Computer Science 2023-11-03 Yinghua Yao , Yuangang Pan , Jing Li , Ivor W. Tsang , Xin Yao

Nonnegative matrix factorization (NMF) is a powerful tool for data mining. However, the emergence of `big data' has severely challenged our ability to compute this fundamental decomposition using deterministic algorithms. This paper…

Machine Learning · Statistics 2018-05-02 N. Benjamin Erichson , Ariana Mendible , Sophie Wihlborn , J. Nathan Kutz

Log parsing, which extracts log templates from semi-structured logs and produces structured logs, is the first and the most critical step in automated log analysis. While existing log parsers have achieved decent results, they suffer from…

Software Engineering · Computer Science 2023-08-15 Junjielong Xu , Qiuai Fu , Zhouruixing Zhu , Yutong Cheng , Zhijing Li , Yuchi Ma , Pinjia He

It is important to identify the discriminative features for high dimensional clustering. However, due to the lack of cluster labels, the regularization methods developed for supervised feature selection can not be directly applied. To learn…

Machine Learning · Statistics 2025-07-16 Zhaoyu Xing , Yang Wan , Juan Wen , Wei Zhong

The Harrow-Hassidim-Lloyd algorithm is intended for solving the system of linear equations on quantum devices. The exponential advantage of the algorithm comes with four caveats. We present a numerical study of the performance of the…

Quantum Physics · Physics 2021-09-21 Sristy Sangskriti , Protik Nag , Summit Haque

A well known drawback of IP-multicast is that it requires per-group state to be stored in the routers. Bloom-filter based source-routed multicast remedies this problem by moving the state from the routers to the packets. However, a fixed…

Networking and Internet Architecture · Computer Science 2016-02-19 Markku Antikainen , Liang Wang , Dirk Trossen , Arjuna Sathiaseelan

Fine-grained hashing has become a powerful solution for rapid and efficient image retrieval, particularly in scenarios requiring high discrimination between visually similar categories. To enable each hash bit to correspond to specific…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Peng Wang , Yong Li , Lin Zhao , Xiu-Shen Wei

This paper aims to improve the performance of large language models by addressing the variable computational demands in inference steps, where some tokens require more computational resources than others. We present HARP, a simple…

Computation and Language · Computer Science 2025-05-27 Romain Storaï , Seung-won Hwang

Online string matching is a computational problem involving the search for patterns or substrings in a large text dataset, with the pattern and text being processed sequentially, without prior access to the entire text. Its relevance stems…

Data Structures and Algorithms · Computer Science 2023-10-25 Matthew N. Palmer , Simone Faro , Stefano Scafiti

Recently, Factorization Machines (FM) has become more and more popular for recommendation systems, due to its effectiveness in finding informative interactions between features. Usually, the weights for the interactions is learnt as a low…

Machine Learning · Computer Science 2018-04-18 Longfei Li , Peilin Zhao , Jun Zhou , Xiaolong Li

Deep hashing has shown promising performance in large-scale image retrieval. However, latent codes extracted by Deep Neural Networks (DNNs) will inevitably lose semantic information during the binarization process, which damages the…

Computer Vision and Pattern Recognition · Computer Science 2022-01-13 Chengyin Xu , Zenghao Chai , Zhengzhuo Xu , Hongjia Li , Qiruyi Zuo , Lingyu Yang , Chun Yuan

Persistent key-value (KV) stores mostly build on the Log-Structured Merge (LSM) tree for high write performance, yet the LSM-tree suffers from the inherently high I/O amplification. KV separation mitigates I/O amplification by storing only…

Databases · Computer Science 2019-06-18 Yongkun Li , Helen H. W. Chan , Patrick P. C. Lee , Yinlong Xu

The Bloom filter provides fast approximate set membership while using little memory. Engineers often use these filters to avoid slow operations such as disk or network accesses. As an alternative, a cuckoo filter may need less space than a…

Data Structures and Algorithms · Computer Science 2020-10-12 Thomas Mueller Graf , Daniel Lemire
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