Related papers: The k-mappability problem revisited

We consider the problem of dictionary matching in a stream. Given a set of strings, known as a dictionary, and a stream of characters arriving one at a time, the task is to report each time some string in our dictionary occurs in the…

We consider the distributed version of the Multiple Knapsack Problem (MKP), where $m$ items are to be distributed amongst $n$ processors, each with a knapsack. We propose different distributed approximation algorithms with a tradeoff…

Unbalanced translocations are among the most frequent chromosomal alterations, accounted for 30\% of all losses of heterozygosity, a major genetic event causing inactivation of tumor suppressor genes. Despite of their central role in…

For the constrained 2-means problem, we present a $O\left(dn+d({1\over\epsilon})^{O({1\over \epsilon})}\log n\right)$ time algorithm. It generates a collection $U$ of approximate center pairs $(c_1, c_2)$ such that one of pairs in $U$ can…

In the classical linear degeneracy testing problem, we are given $n$ real numbers and a $k$-variate linear polynomial $F$, for some constant $k$, and have to determine whether there exist $k$ numbers $a_1,\ldots,a_k$ from the set such that…

The problem of k-minimisation for a DFA M is the computation of a smallest DFA N (where the size |M| of a DFA M is the size of the domain of the transition function) such that their recognized languages differ only on words of length less…

In this work, we address the problem of approximate pattern matching with wildcards. Given a pattern $P$ of length $m$ containing $D$ wildcards, a text $T$ of length $n$, and an integer $k$, our objective is to identify all fragments of $T$…

Palindromes are strings that read the same forward and backward. Problems of computing palindromic structures in strings have been studied for many years with a motivation of their application to biology. The longest palindrome problem is…

Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time…

The $k$-means++ algorithm by Arthur and Vassilvitskii [SODA 2007] is a classical and time-tested algorithm for the $k$-means problem. While being very practical, the algorithm also has good theoretical guarantees: its solution is $O(\log…

A $k$-L(2,1)-labeling of a graph is a function from its vertex set into the set $\{0,...,k\}$, such that the labels assigned to adjacent vertices differ by at least 2, and labels assigned to vertices of distance 2 are different. It is known…

The Minimum Size Tree Decomposition (MSTD) and Minimum Size Path Decomposition (MSPD) problems ask for a given n-vertex graph G and integer k, what is the minimum number of bags of a tree decomposition (respectively, path decomposition) of…

In the range $\alpha$-majority query problem, we are given a sequence $S[1..n]$ and a fixed threshold $\alpha \in (0, 1)$, and are asked to preprocess $S$ such that, given a query range $[i..j]$, we can efficiently report the symbols that…

For any given $\epsilon>0$ we provide an algorithm for the Densest $k$-Subhypergraph Problem with an approximation ratio of at most $O(n^{\theta_m+2\epsilon})$ for $\theta_m=\frac{1}{2}m-\frac{1}{2}-\frac{1}{2m}$ and run time at most…

Given a source of iid samples of edges of an input graph $G$ with $n$ vertices and $m$ edges, how many samples does one need to compute a constant factor approximation to the maximum matching size in $G$? Moreover, is it possible to obtain…

Let $s$ be a string of length $n$ over an alphabet of constant size $\sigma$ and let $c$ and $\epsilon$ be constants with (1 \geq c \geq 0) and (\epsilon > 0). Using (O (n)) time, (O (n^c)) bits of memory and one pass we can always encode…

In the problem of $\texttt{Generalised Pattern Matching}\ (\texttt{GPM})$ [STOC'94, Muthukrishnan and Palem], we are given a text $T$ of length $n$ over an alphabet $\Sigma_T$, a pattern $P$ of length $m$ over an alphabet $\Sigma_P$, and a…

An optimal index solving top-k document retrieval [Navarro and Nekrich, SODA12] takes O(m + k) time for a pattern of length m, but its space is at least 80n bytes for a collection of n symbols. We reduce it to 1.5n to 3n bytes, with…

The \Problem{knapsack} problem is a fundamental problem in combinatorial optimization. It has been studied extensively from theoretical as well as practical perspectives as it is one of the most well-known NP-hard problems. The goal is to…

We describe an algorithm to solve the problem of Boolean CNF-Satisfiability when the input formula is chosen randomly. We build upon the algorithms of Sch{\"{o}}ning 1999 and Dantsin et al.~in 2002. The Sch{\"{o}}ning algorithm works by…