Related papers: Matching Patterns with Variables under Hamming Dis…
Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…
We study the fundamental problem of finding the best string to represent a given set, in the form of the Closest String problem: Given a set $X \subseteq \Sigma^d$ of $n$ strings, find the string $x^*$ minimizing the radius of the smallest…
Given $n$ length-$\ell$ strings $S =\{s_1, ..., s_n\}$ over a constant size alphabet $\Sigma$ together with parameters $d$ and $k$, the objective in the {\em Consensus String with Outliers} problem is to find a subset $S^*$ of $S$ of size…
In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for…
A palindrome is a string that reads the same forward and backward. A palindromic substring $w$ of a string $T$ is called a minimal unique palindromic substring (MUPS) of $T$ if $w$ occurs only once in $T$ and any proper palindromic…
In this work, we study the problems of counting and sampling Mazurkiewicz traces that a regular language touches. Fix an alphabet $\Sigma$ and an independence relation $\mathbb{I} \subseteq \Sigma \times \Sigma$. The input consists of a…
Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…
We study approximation algorithms for variants of the \emph{median string} problem, which asks for a string that minimizes the sum of edit distances from a given set of $m$ strings of length $n$. Only the straightforward $2$-approximation…
In this paper we address the problem of matching patterns in the so-called verification setting in which a novel, query pattern is verified against a single training pattern: the decision sought is whether the two match (i.e. belong to the…
The binary string matching problem consists in finding all the occurrences of a pattern in a text where both strings are built on a binary alphabet. This is an interesting problem in computer science, since binary data are omnipresent in…
We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm,…
Interleaving is a mechanism universally used in wireless access technologies to alleviate the effect of channel correlation. In spite of its wide adoption, to the best of our knowledge, there are no analytical models proposed so far. In…
A reconstruction problem of words from scattered factors asks for the minimal information, like multisets of scattered factors of a given length or the number of occurrences of scattered factors from a given set, necessary to uniquely…
Various grammar compression algorithms have been proposed in the last decade. A grammar compression is a restricted CFG deriving the string deterministically. An efficient grammar compression develops a smaller CFG by finding duplicated…
In the Stable Roommates Problem (SR), a set of $2n$ agents rank one another in a linear order. The goal is to find a matching that is stable: one that has no pair of agents who mutually prefer each other over their assigned partners. We…
Dependent pattern matching is a key feature in dependently typed programming. However, there is a theory-practice disconnect: while many proof assistants implement pattern matching as primitive, theoretical presentations give semantics to…
We study the complexity of constraint satisfaction problems for templates $\Gamma$ that are first-order definable in $(\Bbb Z; succ)$, the integers with the successor relation. Assuming a widely believed conjecture from finite domain…
The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…
High order networks are weighted hypergraphs col- lecting relationships between elements of tuples, not necessarily pairs. Valid metric distances between high order networks have been defined but they are difficult to compute when the…