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We propose a gate-based Quantum Genetic Algorithm (QGA) for real-valued global optimization. In this model, individuals are represented by quantum circuits whose measurement outcomes are decoded into real-valued vectors through binary…

Quantum Physics · Physics 2025-11-10 Leandro C. Souza , Laurent E. Dardenne , Renato Portugal

Designing novel proteins with desired characteristics remains a significant challenge due to the large sequence space and the complexity of sequence-function relationships. Efficient exploration of this space to identify sequences that meet…

Machine Learning · Computer Science 2026-03-04 Erik Hartman , Di Tang , Johan Malmström

Genetic programming (GP) is an evolutionary computation technique to solve problems in an automated, domain-independent way. Rather than identifying the optimum of a function as in more traditional evolutionary optimization, the aim of GP…

Neural and Evolutionary Computing · Computer Science 2019-05-15 Andrei Lissovoi , Pietro S. Oliveto

The talk describes a general approach of a genetic algorithm for multiple objective optimization problems. A particular dominance relation between the individuals of the population is used to define a fitness operator, enabling the genetic…

Artificial Intelligence · Computer Science 2008-09-03 Martin Josef Geiger

The user-level brokers in grids consider individual application QoS requirements and minimize their cost without considering demands from other users. This results in contention for resources and sub-optimal schedules. Meta-scheduling in…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-03-10 Saurabh Garg , Pramod Konugurthi , Rajkumar Buyya

This paper presents our computational methodology using Genetic Algorithms (GA) for exploring the nature of RNA editing. These models are constructed using several genetic editing characteristics that are gleaned from the RNA editing system…

Neural and Evolutionary Computing · Computer Science 2007-05-23 C. Huang , L. M. Rocha

PyGALAX is a Python package for geospatial analysis that integrates automated machine learning (AutoML) and explainable artificial intelligence (XAI) techniques to analyze spatial heterogeneity in both regression and classification tasks.…

Machine Learning · Computer Science 2026-02-03 Pingping Wang , Yihong Yuan , Lingcheng Li , Yongmei Lu

We introduce Genome-Factory, the first integrated Python library for tuning, deploying, and interpreting genomic foundation models. Our core contribution is to simplify and unify the workflow for genomic model development: data collection,…

Genomics · Quantitative Biology 2026-05-18 Weimin Wu , Xuefeng Song , Yibo Wen , Qinjie Lin , Zhihan Zhou , Jerry Yao-Chieh Hu , Zhong Wang , Han Liu

Non-sharable sensitive data collection and analysis in large-scale consortia for genomic research is complicated. Time consuming issues in installing software arise due to different operating systems, software dependencies and running the…

GitHub Copilot, an extension for the Visual Studio Code development environment powered by the large-scale language model Codex, makes automatic program synthesis available for software developers. This model has been extensively studied in…

Software Engineering · Computer Science 2021-11-16 Dominik Sobania , Martin Briesch , Franz Rothlauf

Data gridding is a common task in astronomy and many other science disciplines. It refers to the resampling of irregularly sampled data to a regular grid. We present cygrid, a library module for the general purpose programming language…

Instrumentation and Methods for Astrophysics · Physics 2016-06-08 B. Winkel , D. Lenz , L. Flöer

The increasing demand for digital literacy and artificial intelligence (AI) fluency in the workforce has highlighted the need for scalable, efficient programming instruction. This study evaluates the effectiveness of integrating generative…

Computers and Society · Computer Science 2025-05-28 Ian McCulloh , Pedro Rodriguez , Srivaths Kumar , Manu Gupta , Viplove Raj Sharma , Benjamin Johnson , Anthony N. Johnson

Feature selection has always been a critical step in pattern recognition, in which evolutionary algorithms, such as the genetic algorithm (GA), are most commonly used. However, the individual encoding scheme used in various GAs would either…

Machine Learning · Computer Science 2017-05-01 Benteng Ma , Yong Xia

Automatic programming, the task of generating computer programs compliant with a specification without a human developer, is usually tackled either via genetic programming methods based on mutation and recombination of programs, or via…

Artificial Intelligence · Computer Science 2021-02-09 Vadim Liventsev , Aki Härmä , Milan Petković

Model merging allows combining the capabilities of existing models into a new one - post hoc, without additional training. This has made it increasingly popular thanks to its low cost and the availability of libraries that support merging…

Machine Learning · Computer Science 2025-08-25 Adrian Robert Minut , Tommaso Mencattini , Andrea Santilli , Donato Crisostomi , Emanuele Rodolà

Non-functional properties, such as runtime or memory use, are important to mobile app users and developers, as they affect user experience. Previous work on automated improvement of non-functional properties in mobile apps failed to address…

Software Engineering · Computer Science 2023-08-23 James Callan , Justyna Petke

This paper describes the software implementation of genetic algorithm for identifying and selecting most relevant results received during sequentially executed subject search operations. Simulated evolutionary process generates sustainable…

Information Retrieval · Computer Science 2015-04-17 V. K. Ivanov , P. I. Meskin

In medical sciences, a biomarker is "a characteristic that is objectively measured and evaluated as an indicator of normal biological processes, pathogenic processes, or pharmacologic responses to a therapeutic intervention". Molecular…

Quantitative Methods · Quantitative Biology 2015-08-03 Frederico G. C. Arnoldi , Rodrigo F. Rodrigues , Celio L. Silva

This paper describes the autofeat Python library, which provides scikit-learn style linear regression and classification models with automated feature engineering and selection capabilities. Complex non-linear machine learning models, such…

Machine Learning · Computer Science 2020-02-27 Franziska Horn , Robert Pack , Michael Rieger

Recently, knowledge graph embeddings (KGEs) received significant attention, and several software libraries have been developed for training and evaluating KGEs. While each of them addresses specific needs, we re-designed and re-implemented…

Machine Learning · Computer Science 2020-07-31 Mehdi Ali , Max Berrendorf , Charles Tapley Hoyt , Laurent Vermue , Sahand Sharifzadeh , Volker Tresp , Jens Lehmann
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