Related papers: Equilibrium Energy and Entropy of Vortex Filaments…
Numerical simulation of stochastic dynamics of vortex filaments under action of random (Langevin) force is fulfilled. Calculations are performed on base of the full Biot--Savart law for different intensities of the Langevin force. A new…
This work puts into mathematical, statistical mechanical, and thermodynamical context the initial stages of the genesis of tornado-like vortices with the aim to be consistent with the current state of knowledge of the process of…
Entropy and free-energy estimation are key in thermodynamic characterization of simulated systems ranging from spin models through polymers, colloids, protein structure, and drug-design. Current techniques suffer from being model specific,…
Recent advances in cold-atom platforms have made real-time dynamics accessible, renewing interest in the motion of superfluid vortices in two-dimensional domains. Here we show that the energy and the trajectories of arbitrary vortex…
A computational method is developed to work on an inverse equilibrium problem with an interest towards applications with protein folding. In general, we are given a set of equilibrium confgiurations and want to derive the most probable…
We propose an experimental procedure to cool fermionic atoms loaded into an optical lattice. The central idea is to spatially divide the system into entropy-rich and -poor regions by shaping the confining potential profile. Atoms in regions…
A numerical method to calculate equilibrium vortex-line configurations in bulk anisotropic type-II superconductors, at zero temperature, placed in an external magnetic field is introduced and applied to two physical problems. The method is…
A local equilibrium approach for the kinetics of a simplified protein folding model, whose equilibrium thermodynamics is exactly solvable, was developed in [M. Zamparo and A. Pelizzola, Phys. Rev. Lett. 97, 068106 (2006)]. Important…
Optimization problems associated with the interaction of linked particles are at the heart of polymer science, protein folding and other important problems in the physical sciences. In this review we explain how to recast these problems as…
We investigate theoretically globally nonuniform configurations of quantized-flux vortices in clean superconductors trapped by an external force field that induces a nonuniform vortex density profile. Using an extensive series of numerical…
The point vortex model is an idealized model for describing the dynamics of many vortices with numerical efficiency, and has been shown to be powerful in modeling the dynamics of vortices in a superfluid. The model can be extended to…
We present an efficient method for extracting energy levels from lattice QCD correlation functions by computing the eigenvalues of the transfer matrix associated with the lattice QCD Hamiltonian. While mathematically and numerically…
Estimating vibrational entropy is a significant challenge in thermodynamics and statistical mechanics due to its reliance on quantum mechanical properties. This paper introduces a quantum algorithm designed to estimate vibrational entropy…
The Quantizer problem is a tessellation optimisation problem where point configurations are identified such that the Voronoi cells minimise the second moment of the volume distribution. While the ground state (optimal state) in 3D is almost…
We present finite-element numerical algorithms for the identification of vortices in quantum fluids described by a macroscopic complex wave function. Their implementation using the free software FreeFem++ is distributed with this paper as a…
The motion of point vortices constitutes an especially simple class of solutions to Euler's equation for two dimensional, inviscid, incompressible, and irrotational fluids. In addition to their intrinsic mathematical importance, these…
Half-quantum vortices (HQVs) can exist in a superconductor or superfluid with an exact or approximate U(1) \times U(1) symmetry, for instance in spinor condensates, 3He-A, Sr2RuO4, and possibly cuprate superconductors with stripe order. In…
Folding kinetics of a lattice model of protein is studied. It uses the Random Energy Model for the intrachain couplings and a temperature dependent free energy of solvation derived from a realistic hydration model of apolar solutes. The…
We study the conformational equilibria of two peptides using a novel statistical mechanics approach designed for calculating free energy differences between highly dis-similar conformational states. Our results elucidate the contrasting…
We study the quench dynamics of the $q$ Potts model on different bi/tri-dimensional lattice topologies. In particular we are interested in instantaneous quenches from $T_i \rightarrow \infty$ to $T \leq T_s$, where $T_s$ is the…