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Learning depends on changes in synaptic connections deep inside the brain. In multilayer networks, these changes are triggered by error signals fed back from the output, generally through a stepwise inversion of the feedforward processing…

Neurons and Cognition · Quantitative Biology 2021-01-05 William F. Podlaski , Christian K. Machens

Directed networks such as gene regulation networks and neural networks are connected by arcs (directed links). The nodes in a directed network are often strongly interwound by a huge number of directed cycles, which lead to complex…

Physics and Society · Physics 2017-08-02 Jin-Hua Zhao , Hai-Jun Zhou

The propagation of noise through parallel regulatory pathways is a characteristic feature of feed-forward loops in genetic networks. Although the contributions of the direct and indirect regulatory pathways of feed-forward loops to output…

Molecular Networks · Quantitative Biology 2025-07-10 Mintu Nandi , Sudip Chattopadhyay , Suman K Banik

Living cells are continually exposed to environmental signals that vary in time. These signals are detected and processed by biochemical networks, which are often highly stochastic. To understand how cells cope with a fluctuating…

Molecular Networks · Quantitative Biology 2012-06-01 Wiet de Ronde , Filipe Tostevin , Pieter Rein ten Wolde

Spike patterns have been reported to encode sensory information in several brain areas. Here we assess the role of specific patterns in the neural code, by comparing the amount of information transmitted with different choices of the…

Quantitative Methods · Quantitative Biology 2009-12-14 Hugo Gabriel Eyherabide , Ines Samengo

Recordings from area V4 of monkeys have revealed that when the focus of attention is on a visual stimulus within the receptive field of a cortical neuron, two distinct changes can occur: The firing rate of the neuron can change and there…

Neurons and Cognition · Quantitative Biology 2007-05-23 Paul H. E. Tiesinga , Jean-Marc Fellous , Emilio Salinas , Jorge V. Jose , Terrence J. Sejnowski

Human cognition emerges from coordinated spiking dynamics in distributed neural circuits, where information is encoded via both firing rates and precise spike timing determined by brain rhythms. Inspired by this notion, we propose a…

Neurons and Cognition · Quantitative Biology 2026-05-05 Tingting Dan , Guorong Wu

The activity of neurons within brain circuits has been ubiquitously reported to be correlated. The impact of these correlations on brain function has been extensively investigated. Correlations can in principle increase or decrease the…

Neurons and Cognition · Quantitative Biology 2025-07-24 Miguel Ibáñez-Berganza , Giulio Bondanelli , Stefano Panzeri

The correlated variability in the responses of a neural population to the repeated presentation of a sensory stimulus is a universally observed phenomenon. Such correlations have been studied in much detail, both with respect to their…

Neurons and Cognition · Quantitative Biology 2018-07-04 Volker Pernice , Rava Azeredo da Silveira

In the classic view of cortical rhythms, the interaction between excitatory pyramidal neurons (E) and inhibitory parvalbumin neurons (I) has been shown to be sufficient to generate gamma and beta band rhythms. However, it is now clear that…

Neurons and Cognition · Quantitative Biology 2025-10-27 Arnab Dey Sarkar , Bard Ermentrout

Activity in coupled systems is often oscillatory, for example, the firing pattern of neuronal populations. Whereas these oscillations have been studied predominantly in local circuits, here we show how the topology of large-scale networks,…

Neurons and Cognition · Quantitative Biology 2014-05-15 Marcus Kaiser

Spike-timing dependent plasticity (STDP) is an organizing principle of biological neural networks. While synchronous firing of neurons is considered to be an important functional block in the brain, how STDP shapes neural networks possibly…

Neurons and Cognition · Quantitative Biology 2009-05-20 Yuko K. Takahashi , Hiroshi Kori , Naoki Masuda

This perspective article investigates how auditory stimuli influence neural network dynamics using the FitzHugh-Nagumo (FHN) model and empirical brain connectivity data. Results show that synchronization is sensitive to both the frequency…

Neurons and Cognition · Quantitative Biology 2025-04-11 Jakub Sawicki

Neural oscillations are electrical activities of the brain measurable at different frequencies. This paper studies the interaction between the fast and slow processes in the brain. We recorded signals intracranially from the simple Wistar…

Neurons and Cognition · Quantitative Biology 2022-05-12 Evgeniia S. Sevasteeva , Sergei A. Plotnikov , Dmitry R. Belov

Models of neural responses to stimuli with complex spatiotemporal correlation structure often assume that neurons are only selective for a small number of linear projections of a potentially high-dimensional input. Here we explore recent…

Neurons and Cognition · Quantitative Biology 2013-06-19 Kanaka Rajan , Olivier Marre , Gašper Tkačik

In neurosciences, the brain processes information via the firing patterns of connected neurons operating across a spectrum of frequencies. To better understand the effects of these frequencies in the neuron dynamics, we have simulated a…

Neurons and Cognition · Quantitative Biology 2025-11-21 Gabriel Marghoti , Thiago L. Prado , Miguel A. F. Sanjuán , Sergio R. Lopes

The structure of the axon-dendrite connections of neurons of the brain creates a rich spatial structure in which provided various combinations of signals surrounding neurons. Structure of dendritic trees and shape of dendritic spines allow…

Artificial Intelligence · Computer Science 2014-07-25 Alexey Redozubov

Network systems can exhibit memory effects in which the interactions between different pairs of nodes adapt in time, leading to the emergence of preferred connections, patterns, and sub-networks. To a first approximation, this memory can be…

Disordered Systems and Neural Networks · Physics 2024-11-12 Gianmarco Zanardi , Paolo Bettotti , Jules Morand , Lorenzo Pavesi , Luca Tubiana

We analyze the influence of music in a network of FitzHugh-Nagumo oscillators with empirical structural connectivity measured in healthy human subjects. We report an increase of coherence between the global dynamics in our network and the…

Adaptation and Self-Organizing Systems · Physics 2022-06-10 Jakub Sawicki , Lenz Hartmann , Rolf Bader , Eckehard Schöll

In this paper, we systematically investigate both the synfire propagation and firing rate propagation in feedforward neuronal network coupled in an all-to-all fashion. In contrast to most earlier work, where only reliable synaptic…

Neurons and Cognition · Quantitative Biology 2015-03-19 Daqing Guo , Chunguang Li