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Coordinated motion of cell monolayers during epithelial wound healing and tissue morphogenesis involves mechanical stress generation. Here we propose a model for the dynamics of epithelial expansion that couples mechanical deformations in…

Soft Condensed Matter · Physics 2015-06-09 Shiladitya Banerjee , Kazage J. C. Utuje , M. Cristina Marchetti

We examine a collection of particles interacting with inverse-square two-body potentials in the thermodynamic limit. We find explicit large-amplitude density waves and soliton solutions for the motion of the system. Waves can be constructed…

High Energy Physics - Theory · Physics 2009-10-28 Alexios P. Polychronakos

The present article is an invited contribution to the Encyclopedia of Complexity and System Science, Robert A. Meyers Ed., Springer New York (2009). It is a review of the biophysical mechanisms that underly cell motility. It mainly focuses…

Biological Physics · Physics 2011-09-22 Thomas Risler

Movements of molecular motors on cytoskeletal filaments are described by directed walks on a line. Detachment from this line is allowed to occur with a small probability. Motion in the surrounding fluid is described by symmetric random…

Statistical Mechanics · Physics 2007-05-23 Theo M. Nieuwenhuizen , Stefan Klumpp , Reinhard Lipowsky

From protein motifs to black holes, topological solitons are pervasive nonlinear excitations that are robust and can be driven by external fields. So far, existing driving mechanisms all accelerate solitons and antisolitons in opposite…

We study the waves at the interface between two thin horizontal layers of immiscible fluids subject to high-frequency horizontal vibrations. Previously, the variational principle for energy functional, which can be adopted for treatment of…

Pattern Formation and Solitons · Physics 2015-05-22 Denis S. Goldobin , Anastasiya V. Pimenova , Kseniya V. Kovalevskaya , Dmitry V. Lyubimov , Tatyana P. Lyubimova

We generalize the Cable Model to describe the transport characteristics of the gap junctions coupling adjacent cells in the heart muscle. Our model takes into account recent experimental information about the time dependence of the…

Pattern Formation and Solitons · Physics 2018-09-05 Isabel M. Irurzun , Magdalena M. Defeo

We study existence, stability, and dynamics of linear and nonlinear stationary modes propagating in radially symmetric multi-core waveguides with balanced gain and loss. We demonstrate that, in general, the system can be reduced to an…

The actin cortex is a thin layer of actin, myosin, and actin binding proteins that underlies the membrane of most animal cells. It is highly dynamic and can undergo remodelling on time-scales of tens of seconds thanks to protein turnover…

Cell Behavior · Quantitative Biology 2020-06-24 Manasi Kelkar , Pierre Bohec , Guillaume Charras

A novel approach to protein folding dynamics is presented. We suggest that folding of protein may be mediated via interaction with solitons which propagate along the molecular chain. A simple toy model is presented in which a Sine-Gordon…

Condensed Matter · Physics 2007-05-23 S. Caspi , E. Ben-Jacob

Tides represent the daily alternations of high and low waters along coastlines and in oceans, and the current theory (termed the gravitational forcing mechanism) explains them as a manifestation of the response of ocean water to the Moon's…

Atmospheric and Oceanic Physics · Physics 2025-01-29 Yongfeng Yang

Propagating spiral waves have been discovered in various chemical, biological and physical systems. Spiral waves in multicellular organisms are often associated with essential living functions. Although certain eukaryotic microorganisms…

Biological Physics · Physics 2024-06-04 Shiqi Liu , Ye Li , Yuhao Wang , Yilin Wu

We demonstrate an original approach to acquire nonlinear control over the angular momentum of a cluster of solitary waves. Our model, derived from a general description of nonlinear energy propagation in dispersive media, shows that the…

Classical Physics · Physics 2009-11-13 Andrea Fratalocchi , Armando Piccardi , Marco Peccianti , Gaetano Assanto

A novel discrete model (D-model) is presented describing nonlinear wave interactions in systems with small and moderate nonlinearity under narrow frequency band excitation. It integrates in a single theoretical frame two mechanisms of…

Fluid Dynamics · Physics 2012-11-02 Elena Kartashova

The oral surface of sea stars is lined with arrays of tube feet that enable them to achieve highly controlled locomotion on various terrains. The activity of the tube feet is orchestrated by a nervous system that is distributed throughout…

Biological Physics · Physics 2019-12-13 Sina Heydari , Amy Johnson , Olaf Ellers , Matthew J. McHenry , Eva Kanso

Solid state physics deals with systems composed of atoms with strongly bound electrons. The tunneling probability of each electron is determined by interactions that typically extend to neighboring sites, as their corresponding wave…

Materials Science · Physics 2019-11-27 F. Ramírez-Ramírez , E. Flores-Olmedo , G. Báez , E. Sadurní , R. ~A. Méndez-Sánchez

The pedunculopontine nucleus (PPN) is a heterogeneous brainstem locomotor hub implicated in Parkinson's disease and potentially relevant for its treatment. We propose single-compartment, conductance-based models for three classes of PPN…

Dynamical Systems · Mathematics 2026-03-13 Anna Kishida Thomas , Jonathan E. Rubin

Spiral waves are striking self-organized coherent structures that organize spatio-temporal dynamics in dissipative, spatially extended systems. In this paper, we provide a conceptual approach to various properties of spiral waves. Rather…

Pattern Formation and Solitons · Physics 2021-02-09 Björn Sandstede , Arnd Scheel

Recent studies have revealed the complex structure of nerve signals in axons. There is experimental evidence that the propagation of an electrical signal (action potential) is accompanied by mechanical and thermal effects. In this paper,…

Biological Physics · Physics 2020-09-21 Jüri Engelbrecht , Kert Tamm , Tanel Peets

Spatially distributed limited-cycle oscillators are seen in various physical and biological systems. In internal organs, mechanical motions are induced by the stimuli of spatially distributed limit-cycle oscillators. We study several…

Adaptation and Self-Organizing Systems · Physics 2017-04-05 Hidestugu Sakaguchi , Yuuki Mukae