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There exists many complicated $k$-noncrossing pseudoknot RNA structures in nature based on some special conditions. The special characteristic of RNA structures gives us great challenges in researching the enumeration, prediction and the…

Combinatorics · Mathematics 2020-11-23 Yangyang Zhao

The main goal of the present paper is to construct new invariants of knots with additional structure by adding new gradings to the Khovanov complex. The ideas given below work in the case of virtual knots, closed braids and some other cases…

Geometric Topology · Mathematics 2007-10-22 Vassily Olegovich Manturov

We consider the hyperelliptic handlebody group on a closed surface of genus $g$. This is the subgroup of the mapping class group on a closed surface of genus $g$ consisting of isotopy classes of homeomorphisms on the surface that commute…

Geometric Topology · Mathematics 2017-02-22 Susumu Hirose , Eiko Kin

Knots have a twisted history in quantum physics. They were abandoned as failed models of atoms. Only much later was the connection between knot invariants and Wilson loops in topological quantum field theory discovered. Here we show that…

Mesoscale and Nanoscale Physics · Physics 2021-01-08 Haiping Hu , Erhai Zhao

RNA molecules are known to form complex secondary structures including pseudoknots. A systematic framework for the enumeration, classification and prediction of secondary structures is critical to determine the biological significance of…

Biomolecules · Quantitative Biology 2025-12-24 Rayan Ibrahim , Allison H. Moore

The present paper is a review of the current state of Graph-Link Theory (graph-links are also closely related to homotopy classes of looped interlacement graphs), dealing with a generalisation of knots obtained by translating the…

Geometric Topology · Mathematics 2010-01-05 Denis Petrovich Ilyutko , Vassily Olegovich Manturov

The classical Thistlethwaite theorem for links can be phrased as asserting that the Kauffman bracket of a link can be obtained from an evaluation of the Bollob\'as-Riordan polynomial of a ribbon graph associated to one of the link's…

Geometric Topology · Mathematics 2024-12-18 Sergei Chmutov , Qingying Deng , Joanna A. Ellis-Monaghan , Sergei Lando , Wout Moltmaker

Skew braces are intensively studied owing to their wide ranging connections and applications. We generalize the definition of a skew brace to give a new algebraic object, which we term a skew bracoid. Our construction involves two groups…

Group Theory · Mathematics 2023-05-26 Isabel Martin-Lyons , Paul J. Truman

Knots naturally appear in continuous dynamical systems as flow periodic trajectories. However, discrete dynamical systems are also closely connected with the theory of knots and links. For example, for Pixton diffeomorphisms, the…

Dynamical Systems · Mathematics 2023-03-09 Valeriy Bardakov , Tatyana Kozlovskaya , Olga Pochinka

Tying knots and linking microscopic loops of polymers, macromolecules, or defect lines in complex materials is a challenging task for material scientists. We demonstrate the knotting of microscopic topological defect lines in chiral nematic…

Soft Condensed Matter · Physics 2011-07-11 Uroš Tkalec , Miha Ravnik , Simon Čopar , Slobodan Žumer , Igor Muševič

This paper focuses on the graphs in the Petersen family, the set of minor minimal intrinsically linked graphs. We prove there is a relationship between algebraic linking of an embedding and knotting in an embedding. We also present a more…

Geometric Topology · Mathematics 2010-08-03 Danielle O'Donnol

In the early 1980's Mike Freedman showed that all knots with trivial Alexander polynomial are topologically slice (with fundamental group Z). This paper contains the first new examples of topologically slice knots. In fact, we give a…

Geometric Topology · Mathematics 2014-11-26 Stefan Friedl , Peter Teichner

Given any oriented link diagram, one can construct knot invariants using skein relations. Usually such a skein relation contains three or four terms. In this paper, the author introduces several new ways to smooth a crossings, and uses a…

Geometric Topology · Mathematics 2017-03-20 Zhiqing Yang

A $GL_d$-pseudocharacter is a function from a group $\Gamma$ to a ring $k$ satisfying polynomial relations which make it "look like" the character of a representation. When $k$ is an algebraically closed field, Taylor proved that…

Representation Theory · Mathematics 2020-08-21 Matthew Weidner

We consider a natural model of random knotting- choose a knot diagram at random from the finite set of diagrams with n crossings. We tabulate diagrams with 10 and fewer crossings and classify the diagrams by knot type, allowing us to…

Geometric Topology · Mathematics 2016-10-12 Jason Cantarella , Harrison Chapman , Matt Mastin

In this paper, which is mostly a research announcement, we give a new algebraic construction of knot contact homology in the sense of L. Ng [Ng05a]. For a link $L$ in $ {\mathbb R}^3 $, we define a differential graded (DG) $k$-category $…

Algebraic Topology · Mathematics 2016-11-11 Yuri Berest , Alimjon Eshmatov , Wai-kit Yeung

In this paper, we study distribution of the zeros of the Alexander polynomials of knots and links in S^3. We call a knot or link "real stable" (resp. "circular stable") if all the zeros of its Alexander polynomial are real (resp. unit…

Geometric Topology · Mathematics 2013-07-08 Mikami Hirasawa , Kunio Murasugi

We discuss an "extrinsic" property of knots in a 3-subspace of the 3-sphere $S^3$ to characterize how the subspace is embedded in $S^3$. Specifically, we show that every knot in a subspace of the 3-sphere is transient if and only if the…

Geometric Topology · Mathematics 2016-03-30 Yuya Koda , Makoto Ozawa

In this paper, we introduce the notion of pseudo-triangular norm (pseudo-t-norm, for short) as a classes of weakly associative operations on trellises and as a generalization of triangular norm (t-norm, for short) on bounded trellises and…

Rings and Algebras · Mathematics 2023-05-26 Abdelkrim Mehenni , Lemnaouar Zedam

Twisted links are a generalization of virtual links. As virtual links correspond to abstract links on orientable surfaces, twisted links correspond to abstract links on (possibly non-orientable) surfaces. In this paper, we introduce the…

Geometric Topology · Mathematics 2016-01-12 Naoko Kamada , Seiichi Kamada
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