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Mechanistic models are important tools to describe and understand biological processes. However, they typically rely on unknown parameters, the estimation of which can be challenging for large and complex systems. We present pyPESTO, a…

We present MXtalTools, a flexible Python package for the data-driven modelling of molecular crystals, facilitating machine learning studies of the molecular solid state. MXtalTools comprises several classes of utilities: (1) synthesis,…

Machine Learning · Computer Science 2025-11-26 Michael Kilgour , Mark E. Tuckerman , Jutta Rogal

This paper proposes a new highly scalable and asymptotically optimal control synthesis algorithm from linear temporal logic specifications, called $\text{STyLuS}^{*}$ for large-Scale optimal Temporal Logic Synthesis, that is designed to…

Robotics · Computer Science 2020-04-09 Yiannis Kantaros , Michael M. Zavlanos

Modern time series analysis demands frameworks that are flexible, efficient, and extensible. However, many existing Python libraries exhibit limitations in modularity and in their native support for irregular, multi-source, or sparse data.…

Machine Learning · Computer Science 2025-08-27 Zhijin Wang , Senzhen Wu , Yue Hu , Xiufeng Liu

In this paper, we present Real-Time Analog Monitoring Tool (RTAMT), a tool for quantitative monitoring of Signal Temporal Logic (STL) specifications. The library implements a flexible architecture that supports: (1) various environments…

Logic in Computer Science · Computer Science 2025-02-03 Tomoya Yamaguchi , Bardh Hoxha , Dejan Nickovic

This paper presents catsim, the first package written in the Python language specialized in computerized adaptive tests and the logistical models of Item Response Theory. catsim provides functions for generating item and examinee…

Applications · Statistics 2018-07-23 Douglas De Rizzo Meneghetti , Plinio Thomaz Aquino Junior

Cyber-physical systems (CPS) are systems that interact with the physical world via sensors and actuators. In such a system, the reading of a sensor represents measures of a physical quantity, and sensor values are often reals ranged over…

Software Engineering · Computer Science 2013-07-16 Chih-Hong Cheng , Edward A. Lee

Hardware generation languages (HGLs) increase hardware design productivity by creating parameterized modules and test benches. Unfortunately, existing tools are not widely adopted due to several demerits, including limited support for…

Hardware Architecture · Computer Science 2023-09-12 Jintao Sun , Zeke Wang , Tao Lu , Wenzhi Chen

PHYSBO (optimization tools for PHYSics based on Bayesian Optimization) is a Python library for fast and scalable Bayesian optimization. It has been developed mainly for application in the basic sciences such as physics and materials…

Computational Physics · Physics 2022-05-26 Yuichi Motoyama , Ryo Tamura , Kazuyoshi Yoshimi , Kei Terayama , Tsuyoshi Ueno , Koji Tsuda

Automated regression test generation has been extensively explored, yet generating high-quality tests for Python programs remains particularly challenging. Because of the Python's dynamic typing features, existing approaches, ranging from…

Software Engineering · Computer Science 2025-10-23 Runlin Liu , Zhe Zhang , Yunge Hu , Yuhang Lin , Xiang Gao , Hailong Sun

Cyber-Physical Systems (CPSs) are often safety-critical and deployed in uncertain environments. Identifying scenarios where CPSs do not comply with requirements is fundamental but difficult due to the multidisciplinary nature of CPSs. We…

Software Engineering · Computer Science 2024-08-20 Claudio Mandrioli , Seung Yeob Shin , Martina Maggio , Domenico Bianculli , Lionel Briand

We present PyTorch Geometric Temporal a deep learning framework combining state-of-the-art machine learning algorithms for neural spatiotemporal signal processing. The main goal of the library is to make temporal geometric deep learning…

Tensor product state (TPS) based methods are powerful tools to efficiently simulate quantum many-body systems in and out of equilibrium. In particular, the one-dimensional matrix-product (MPS) formalism is by now an established tool in…

Strongly Correlated Electrons · Physics 2018-12-03 Johannes Hauschild , Frank Pollmann

The behavior of a cyber-physical system (CPS) is usually defined in terms of the input and output signals processed by sensors and actuators. Requirements specifications of CPSs are typically expressed using signal-based temporal…

Signal Processing · Electrical Eng. & Systems 2020-12-29 Chaima Boufaied , Maris Jukss , Domenico Bianculli , Lionel Claude Briand , Yago Isasi Parache

In runtime verification, manually formalizing a specification for monitoring system executions is a tedious and error-prone process. To address this issue, we consider the problem of automatically synthesizing formal specifications from…

Artificial Intelligence · Computer Science 2023-10-27 Ritam Raha , Rajarshi Roy , Nathanael Fijalkow , Daniel Neider , Guillermo A. Perez

This article presents an open-source Python package for simulating micro-thermoelectric generators, based on the work by D. Beretta et al. (Sustainable Energy Fuels, 2017). Featuring a user-friendly graphical user interface and robust…

Mesoscale and Nanoscale Physics · Physics 2025-10-21 D. Beretta

Many important properties of cyber-physical systems (CPS) are defined upon the relationship between multiple executions simultaneously in continuous time. Examples include probabilistic fairness and sensitivity to modeling errors (i.e.,…

Logic in Computer Science · Computer Science 2019-08-07 Yu Wang , Mojtaba Zarei , Borzoo Bonakdarpour , Miroslav Pajic

Deep learning has brought significant advancements to X-ray Computed Tomography (CT) reconstruction, offering solutions to challenges arising from modern imaging technologies. These developments benefit from methods that combine classical…

Machine Learning · Computer Science 2025-11-12 Linda-Sophie Schneider , Yipeng Sun , Chengze Ye , Markus Michen , Andreas Maier

Session types provide a typing discipline for message-passing systems. However, most session type approaches assume an ideal world: one in which everything is reliable and without failures. Yet this is in stark contrast with distributed…

Programming Languages · Computer Science 2023-05-16 Adam D. Barwell , Ping Hou , Nobuko Yoshida , Fangyi Zhou

This paper presents a methodology for temporal logic verification of discrete-time stochastic systems. Our goal is to find a lower bound on the probability that a complex temporal property is satisfied by finite traces of the system.…

Systems and Control · Computer Science 2019-11-22 Pushpak Jagtap , Sadegh Soudjani , Majid Zamani