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Deep neural network (DNN) models have recently obtained state-of-the-art prediction accuracy for the transcription factor binding (TFBS) site classification task. However, it remains unclear how these approaches identify meaningful DNA…

Machine Learning · Computer Science 2016-10-20 Jack Lanchantin , Ritambhara Singh , Beilun Wang , Yanjun Qi

In machine learning, exploring data correlations to predict outcomes is a fundamental task. Recognizing causal relationships embedded within data is pivotal for a comprehensive understanding of system dynamics, the significance of which is…

Machine Learning · Computer Science 2023-11-28 Simi Job , Xiaohui Tao , Taotao Cai , Haoran Xie , Lin Li , Jianming Yong , Qing Li

Protein-protein interactions (PPIs) play key roles in a broad range of biological processes. Numerous strategies have been proposed for predicting PPIs, and among them, graph-based methods have demonstrated promising outcomes owing to the…

Machine Learning · Computer Science 2024-04-19 Mingda Xu , Peisheng Qian , Ziyuan Zhao , Zeng Zeng , Jianguo Chen , Weide Liu , Xulei Yang

Traffic prediction is the cornerstone of an intelligent transportation system. Accurate traffic forecasting is essential for the applications of smart cities, i.e., intelligent traffic management and urban planning. Although various methods…

Machine Learning · Computer Science 2021-05-04 Fuxian Li , Jie Feng , Huan Yan , Guangyin Jin , Depeng Jin , Yong Li

Convolutional Neural Networks (CNNs) have been very successful at solving a variety of computer vision tasks such as object classification and detection, semantic segmentation, activity understanding, to name just a few. One key enabling…

Computer Vision and Pattern Recognition · Computer Science 2021-05-18 Guohao Li , Matthias Müller , Guocheng Qian , Itzel C. Delgadillo , Abdulellah Abualshour , Ali Thabet , Bernard Ghanem

Graph Neural Networks (GNNs) are increasingly becoming the favorite method for graph learning. They exploit the semi-supervised nature of deep learning, and they bypass computational bottlenecks associated with traditional graph learning…

Machine Learning · Computer Science 2023-11-08 Mashaan Alshammari , John Stavrakakis , Adel F. Ahmed , Masahiro Takatsuka

Graph convolutional networks (GCNs) are currently the most promising paradigm for dealing with graph-structure data, while recent studies have also shown that GCNs are vulnerable to adversarial attacks. Thus developing GCN models that are…

Machine Learning · Computer Science 2023-02-17 Jincheng Huang , Lun Du , Xu Chen , Qiang Fu , Shi Han , Dongmei Zhang

Following the success of deep convolutional networks in various vision and speech related tasks, researchers have started investigating generalizations of the well-known technique for graph-structured data. A recently-proposed method called…

Social and Information Networks · Computer Science 2018-09-21 John Boaz Lee , Ryan A. Rossi , Xiangnan Kong , Sungchul Kim , Eunyee Koh , Anup Rao

This paper presents a novel approach to credit risk prediction by employing Graph Convolutional Neural Networks (GCNNs) to assess the creditworthiness of borrowers. Leveraging the power of big data and artificial intelligence, the proposed…

Machine Learning · Computer Science 2024-10-08 Mengfang Sun , Wenying Sun , Ying Sun , Shaobo Liu , Mohan Jiang , Zhen Xu

Graph Convolution Networks (GCNs) are becoming more and more popular for learning node representations on graphs. Though there exist various developments on sampling and aggregation to accelerate the training process and improve the…

Machine Learning · Computer Science 2020-10-30 Xu Zou , Qiuye Jia , Jianwei Zhang , Chang Zhou , Hongxia Yang , Jie Tang

Real data collected from different applications that have additional topological structures and connection information are amenable to be represented as a weighted graph. Considering the node labeling problem, Graph Neural Networks (GNNs)…

Social and Information Networks · Computer Science 2020-02-06 Xiaoxiao Li , Joao Saude

We propose a novel technique to enhance Knowledge Graph Reasoning by combining Graph Convolution Neural Network (GCN) with the Attention Mechanism. This approach utilizes the Attention Mechanism to examine the relationships between entities…

Information Retrieval · Computer Science 2025-03-24 Meera Gupta , Ravi Khanna , Divya Choudhary , Nandini Rao

In this paper, we consider recommender systems with side information in the form of graphs. Existing collaborative filtering algorithms mainly utilize only immediate neighborhood information and have a hard time taking advantage of deeper…

Machine Learning · Computer Science 2019-05-30 Liwei Wu , Hsiang-Fu Yu , Nikhil Rao , James Sharpnack , Cho-Jui Hsieh

Community detection, aiming to group the graph nodes into clusters with dense inner-connection, is a fundamental graph mining task. Recently, it has been studied on the heterogeneous graph, which contains multiple types of nodes and edges,…

Social and Information Networks · Computer Science 2021-09-07 Linhao Luo , Yixiang Fang , Xin Cao , Xiaofeng Zhang , Wenjie Zhang

The recent introduction of Graph Neural Networks (GNNs) and their growing popularity in the past few years has enabled the application of deep learning algorithms to non-Euclidean, graph-structured data. GNNs have achieved state-of-the-art…

Machine Learning · Computer Science 2020-10-27 Tuomas P. Oikarinen , Daniel C. Hannah , Sohrob Kazerounian

In recent years, Graph Convolutional Networks (GCNs) and their variants have been widely utilized in learning tasks that involve graphs. These tasks include recommendation systems, node classification, among many others. In node…

Machine Learning · Computer Science 2019-12-23 Mustafa Coskun , Burcu Bakir Gungor , Mehmet Koyuturk

Graph convolutional neural network (GCN) has effectively boosted the multi-label image recognition task by introducing label dependencies based on statistical label co-occurrence of data. However, in previous methods, label correlation is…

Computer Vision and Pattern Recognition · Computer Science 2020-08-20 Yun Wang , Tong Zhang , Zhen Cui , Chunyan Xu , Jian Yang

Graph neural networks (GNNs) are designed to process data associated with graphs. They are finding an increasing range of applications; however, as with other modern machine learning techniques, their theoretical understanding is limited.…

Disordered Systems and Neural Networks · Physics 2026-02-23 O. Duranthon , L. Zdeborová

Graph neural networks (GNNs) have significantly improved the representation power for graph-structured data. Despite of the recent success of GNNs, the graph convolution in most GNNs have two limitations. Since the graph convolution is…

Machine Learning · Computer Science 2021-12-30 Jinyoung Park , Sungdong Yoo , Jihwan Park , Hyunwoo J. Kim

Graph convolutional networks (GCNs) have recently become one of the most powerful tools for graph analytics tasks in numerous applications, ranging from social networks and natural language processing to bioinformatics and chemoinformatics,…

Machine Learning · Computer Science 2019-04-05 Fengwen Chen , Shirui Pan , Jing Jiang , Huan Huo , Guodong Long