Related papers: Counting Lyndon Subsequences
With our current level of understanding, the problem of making string theory predictions is not one of "solving" the theory, but rather of trying to determine whether there are any generic expectations. Within this context, we discuss what…
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
Finding the common subsequences of $L$ multiple strings has many applications in the area of bioinformatics, computational linguistics, and information retrieval. A well-known result states that finding a Longest Common Subsequence (LCS)…
Let $X_1, X_2, ..., X_s$ and $Y_1, Y_2, ..., Y_t$ be strings over an alphabet $\Sigma$, where $s$ and $t$ are positive integers. The longest common subsequence and substring problem for multiple strings $X_1, X_2, ..., X_s$ and $Y_1, Y_2,…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…
We find generating functions the number of strings (words) containing a specified number of occurrences of certain types of order-isomorphic classes of substrings called subword patterns. In particular, we find generating functions for the…
A substring $u$ of a string $T$ is called a minimal unique substring (MUS) of $T$ if $u$ occurs exactly once in $T$ and any proper substring of $u$ occurs at least twice in $T$. A string $w$ is called a minimal absent word (MAW) of $T$ if…
We compute the expected number of commutations appearing in a reduced word for the longest element in the symmetric group. The asymptotic behavior of this value is analyzed and shown to approach the length of the permutation, meaning that…
The notion of \emph{string attractor} has recently been introduced in [Prezza, 2017] and studied in [Kempa and Prezza, 2018] to provide a unifying framework for known dictionary-based compressors. A string attractor for a word…
Lately, there is a growing interest in dynamic string matching problems. Specifically, the dynamic Longest Common Factor problem has been researched and some interesting results has been reached. In this paper we examine another classic…
Let $\Sigma$ be an alphabet. For two strings $X$, $Y$, and a constrained string $P$ over the alphabet $\Sigma$, the constrained longest common subsequence and substring problem for two strings $X$ and $Y$ with respect to $P$ is to find a…
The length is(w) of the longest increasing subsequence of a permutation w in the symmetric group S_n has been the object of much investigation. We develop comparable results for the length as(w) of the longest alternating subsequence of w,…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
It is a fundamental property of non-letter Lyndon words that they can be expressed as a concatenation of two shorter Lyndon words. This leads to a naive lower bound log_{2}(n)} + 1 for the number of distinct Lyndon factors that a Lyndon…
Frequent pattern mining is widely used to find ``important'' or ``interesting'' patterns in data. While it is not easy to mathematically define such patterns, maximal frequent patterns are promising candidates, as frequency is a natural…
A {\it superpattern} is a string of characters of length $n$ that contains as a subsequence, and in a sense that depends on the context, all the smaller strings of length $k$ in a certain class. We prove structural and probabilistic results…
Lyndon words have been largely investigated and showned to be a useful tool to prove interesting combinatorial properties of words. In this paper we state new properties of both Lyndon and inverse Lyndon factorizations of a word $w$, with…
We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm,…
Computation on compressed strings is one of the key approaches to processing massive data sets. We consider local subsequence recognition problems on strings compressed by straight-line programs (SLP), which is closely related to…
We evaluate the influence of different alphabet orderings on the Lyndon factorization of a string. Experiments with Pizza & Chili datasets show that for most alphabet reorderings, the number of Lyndon factors is usually small, and the…