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Living systems continually respond to signals from the surrounding environment. Survival requires that their responses adapt quickly and robustly to the changes in the environment. One particularly challenging example is olfactory…

Neurons and Cognition · Quantitative Biology 2024-10-08 Kiri Choi , Will Rosenbluth , Isabella R. Graf , Nirag Kadakia , Thierry Emonet

Neural responses are highly variable, and some portion of this variability arises from fluctuations in modulatory factors that alter their gain, such as adaptation, attention, arousal, expected or actual reward, emotion, and local metabolic…

Neurons and Cognition · Quantitative Biology 2015-07-08 Neil C. Rabinowitz , Robbe L. T. Goris , Johannes Ballé , Eero P. Simoncelli

Hair cells, the sensory receptors of the internal ear, subserve different functions in various receptor organs: they detect oscillatory stimuli in the auditory system, but transduce constant and step stimuli in the vestibular and…

Neurons and Cognition · Quantitative Biology 2017-03-29 Joshua D. Salvi , Daibhid O Maoileidigh , Brian A. Fabella , Melanie Tobin , A. J. Hudspeth

Sensory receptor neurons match their dynamic range to ecologically relevant stimulus intensities. How this tuning is achieved is poorly understood in most receptors. We show that in the C. elegans URX O2 sensing neurons two putative…

Neurons and Cognition · Quantitative Biology 2022-10-12 Shigekazu Oda , Yu Toyoshima , Mario de Bono

Molecular communication (MC) studies biological signals that are found in nature. Most MC literature focuses on particle properties, even though many natural phenomena exhibit wave-like behavior. One such signal is sound waves.…

Signal Processing · Electrical Eng. & Systems 2025-12-02 Fatih Merdan , Ozgur B. Akan

Experimental evidence lends support to the conjecture that the ability of chains of cells to sense the gradient of an external chemical concentration could rely on cell-to-cell communication. This is the basis for the gradient sensing…

Quantitative Methods · Quantitative Biology 2021-02-24 Dallas Foster , Collin Victor , Brian Frost , Juan M. Restrepo

Plants, being sessile organisms, have evolved a variety of defense mechanisms to protect themselves from invaders such as pathogens, insects, and herbivores. One key strategy is the release of volatile organic compounds (VOCs) into the air,…

Other Quantitative Biology · Quantitative Biology 2025-08-25 Mridul Kumar , Soami Daya Krishnananda

Biological entities in nature have developed sophisticated communication methods over millennia to facilitate cooperation. Among these entities, plants are some of the most intricate communicators. They interact with each other through…

Emerging Technologies · Computer Science 2024-11-01 Fatih E. Bilgen , Ozgur B. Akan

The biological skin enables animals to sense various stimuli. Extensive efforts have been made recently to develop smart skin-like sensors to extend the capabilities of biological skins; however, simultaneous sensing of several types of…

Computer Vision and Pattern Recognition · Computer Science 2024-01-17 Sho Shimadera , Kei Kitagawa , Koyo Sagehashi , Tomoaki Niiyama , Satoshi Sunada

Living plants, while contributing to ecological balance and climate regulation, also function as natural sensors capable of transmitting information about their internal physiological states and surrounding conditions. This rich source of…

Machine Learning · Computer Science 2025-07-01 Eduard Buss , Till Aust , Heiko Hamann

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

Molecular Networks · Quantitative Biology 2012-05-01 Ilya Nemenman

Our knowledge of the sensory world is encoded by neurons in sequences of discrete, identical pulses termed action potentials or spikes. There is persistent controversy about the extent to which the precise timing of these spikes is relevant…

Neurons and Cognition · Quantitative Biology 2007-05-23 Ilya Nemenman , Geoffrey D. Lewen , William Bialek , Rob R. de Ruyter van Steveninck

We develop a framework for self-induced phase changes in programmable matter in which a collection of agents with limited computational and communication capabilities can collectively perform appropriate global tasks in response to local…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-28 Shunhao Oh , Dana Randall , Andréa W. Richa

Upon illumination by ultraviolet light, many animal species emit light through fluorescence processes arising from fluorophores embedded within their biological tissues. Fluorescence studies in living organisms are however relatively scarce…

Phototrophic organisms such as plants, photosynthetic bacteria and algae use microscopic complexes of pigment molecules to absorb sunlight. Within the light-harvesting complexes, which frequently have several functional and structural…

The wings of Lepidoptera contain a matrix of living cells whose function requires appropriate temperatures. However, given their small thermal capacity, wings can overheat rapidly in the sun. Here we analyze butterfly wings across a wide…

Cell assemblies manipulation by optogenetics is pivotal to advance neuroscience and neuroengineering. In in vivo applications, photostimulation often broadly addresses a population of cells simultaneously, leading to feed-forward and to…

Neurons and Cognition · Quantitative Biology 2016-04-08 Rocco Pulizzi , Gabriele Musumeci , Chris Van Den Haute , Sebastian Van De Vijver , Veerle Baekelandt , Michele Giugliano

Although continuous advances in theoretical modelling of Molecular Communications (MC) are observed, there is still an insuperable gap between theory and experimental testbeds, especially at the microscale. In this paper, the development of…

Associative learning allows animals to rapidly adapt to changes in the environment. Whether and what aspects of such acquired traits may be transmittable across generations remains unclear. Using prolonged olfactory training and subsequent…

Neurons and Cognition · Quantitative Biology 2013-12-30 Ziv M Williams

Conjugation accelerates bacterial evolution by enabling bacteria to acquire genes horizontally from their neighbors. Plasmid donors must physically encounter and connect with recipients to allow plasmid transfer, and different environments…

Biological Physics · Physics 2025-08-08 Matti Zbinden , Jana S. Huisman , Natasha Blitvic , Roman Stocker , Jonasz Słomka