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An approach to reduce motion artifacts in Quantitative Susceptibility Mapping using deep learning is proposed. We use an affine motion model with randomly created motion profiles to simulate motion-corrupted QSM images. The simulated QSM…

Medical Physics · Physics 2021-05-06 Chao Li , Hang Zhang , Jinwei Zhang , Pascal Spincemaille , Thanh D. Nguyen , Yi Wang

We present several deep learning models for assessing the morphometric fidelity of deep grey matter region models extracted from brain MRI. We test three different convolutional neural net architectures (VGGNet, ResNet and Inception) over…

A learning-based posterior distribution estimation method, Probabilistic Dipole Inversion (PDI), is proposed to solve the quantitative susceptibility mapping (QSM) inverse problem in MRI with uncertainty estimation. In PDI, a deep…

Image and Video Processing · Electrical Eng. & Systems 2021-03-16 Jinwei Zhang , Hang Zhang , Mert Sabuncu , Pascal Spincemaille , Thanh Nguyen , Yi Wang

One often lacks sufficient annotated samples for training deep segmentation models. This is in particular the case for less common imaging modalities such as Quantitative Susceptibility Mapping (QSM). It has been shown that deep models tend…

Quantitative susceptibility mapping (QSM) utilizes MRI phase information to estimate tissue magnetic susceptibility. The generation of QSM requires solving ill-posed background field removal (BFR) and field-to-source inversion problems.…

Image and Video Processing · Electrical Eng. & Systems 2020-08-17 Juan Liu , Kevin M Koch

The starting point in quantitative susceptibility mapping (QSM) is a theoretical model that is used to map susceptibility distributions from magnetic field measurements. It requires regularisation techniques to avoid artefacts in the…

Mathematical Physics · Physics 2021-09-07 Rob F. Remis , Peter M. van den Berg

Quantized neural networks typically require smaller memory footprints and lower computation complexity, which is crucial for efficient deployment. However, quantization inevitably leads to a distribution divergence from the original…

Computer Vision and Pattern Recognition · Computer Science 2022-05-30 Runpei Dong , Zhanhong Tan , Mengdi Wu , Linfeng Zhang , Kaisheng Ma

Cortical thickness measurements from magnetic resonance imaging, an important biomarker in many neurodegenerative and neurological disorders, are derived by many tools from an initial voxel-wise tissue segmentation. White matter (WM)…

Image and Video Processing · Electrical Eng. & Systems 2025-03-27 Vinzenz Uhr , Ivan Diaz , Christian Rummel , Richard McKinley

Magnetic Resonance Imaging (MRI) acquisitions require extensive scan times, limiting patient throughput and increasing susceptibility to motion artifacts. Accelerated parallel MRI techniques reduce acquisition time by undersampling k-space…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Mingi Kang

Purpose: To develop a pipeline for motion artifact correction in mGRE and quantitative susceptibility mapping (QSM). Methods: Deep learning is integrated with autofocus to improve motion artifact suppression, which is applied QSM of…

Signal Processing · Electrical Eng. & Systems 2024-05-28 Chao Li , Jinwei Zhang , Hang Zhang , Jiahao Li , Pascal Spincemaille , Thanh D. Nguyen , Yi Wang

With applications ranging from metabolomics to histopathology, quantitative phase microscopy (QPM) is a powerful label-free imaging modality. Despite significant advances in fast multiplexed imaging sensors and deep-learning-based inverse…

The transition from monolithic to distributed multi-chip quantum architectures has fundamentally altered the circuit compilation landscape, introducing challenges in managing temporal noise variations and minimizing expensive inter-chip…

Quantum Physics · Physics 2025-11-25 Atiye Zeynali , Zahra Bakhshi

Statistical shape modeling is an important tool to characterize variation in anatomical morphology. Typical shapes of interest are measured using 3D imaging and a subsequent pipeline of registration, segmentation, and some extraction of…

Computer Vision and Pattern Recognition · Computer Science 2018-10-02 Riddhish Bhalodia , Shireen Y. Elhabian , Ladislav Kavan , Ross T. Whitaker

A learning-based posterior distribution estimation method, Probabilistic Dipole Inversion (PDI), is proposed to solve quantitative susceptibility mapping (QSM) inverse problem in MRI with uncertainty estimation. A deep convolutional neural…

Image and Video Processing · Electrical Eng. & Systems 2020-04-28 Jinwei Zhang , Hang Zhang , Mert Sabuncu , Pascal Spincemaille , Thanh Nguyen , Yi Wang

Objective: Estimation of the global optima of multiple model parameters is valuable in imaging to form a reliable diagnostic image. Given non convexity of the objective function, it is challenging to avoid from different local minima.…

Machine Learning · Computer Science 2022-04-06 Hongmei Zhang , Kai Wang , Yan Zhou , Shadab Momin , Xiaofeng Yang , Mostafa Fatemi , Michael F. Insana

Artifacts in quantitative susceptibility mapping (QSM) are analyzed to establish an optimal design criterion for QSM inversion algorithms. The magnetic field data is decomposed into two parts, dipole compatible and incompatible parts. The…

Medical Physics · Physics 2017-01-20 Liangdong Zhou , Jae Kyu Choi , Youngwook Kee , Yi Wang , Jin Keun Seo

Gaussian random matrix (GRM) has been widely used to generate linear measurements in compressed sensing (CS) of natural images. However, there actually exist two disadvantages with GRM in practice. One is that GRM has large memory…

Computer Vision and Pattern Recognition · Computer Science 2018-06-20 Wenxue Cui , Feng Jiang , Xinwei Gao , Wen Tao , Debin Zhao

Channel knowledge map (CKM) is a promising technique to achieve environment-aware wireless communication and sensing. Constructing the complete CKM based on channel knowledge observations at sparse locations is a fundamental problem for…

Image and Video Processing · Electrical Eng. & Systems 2026-04-27 Z. Chen , S. Fu , Y. Zeng , X. Xu , Z. Wei

Purpose Supervised deep learning in radiology suffers from notorious inherent limitations: 1) It requires large, hand-annotated data sets, 2) It is non-generalizable, and 3) It lacks explainability and intuition. We have recently proposed…

Computer Vision and Pattern Recognition · Computer Science 2021-03-22 Joseph N Stember , Hrithwik Shalu

In this study, we develop a physics-informed deep learning-based method to synthesize multiple brain magnetic resonance imaging (MRI) contrasts from a single five-minute acquisition and investigate its ability to generalize to arbitrary…