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Virtual screening is a technique used in drug discovery to select the most promising molecules to test in a lab. To perform virtual screening, we need a large set of molecules as input, and storing these molecules can become an issue. In…

Computational Engineering, Finance, and Science · Computer Science 2024-05-01 Gianmarco Accordi , Davide Gadioli , Giorgio Seguini , Andrea R. Beccari , Gianluca Palermo

Despite the rapid progress of Vision-Language Models (VLMs), their capabilities are inadequately assessed by existing benchmarks, which are predominantly English-centric, feature simplistic layouts, and support limited tasks. Consequently,…

Computer Vision and Pattern Recognition · Computer Science 2025-11-14 Ketong Chen , Yuhao Chen , Yang Xue

Document understanding tasks, in particular, Visually-rich Document Entity Retrieval (VDER), have gained significant attention in recent years thanks to their broad applications in enterprise AI. However, publicly available data have been…

Computation and Language · Computer Science 2023-10-27 Lijun Yu , Jin Miao , Xiaoyu Sun , Jiayi Chen , Alexander G. Hauptmann , Hanjun Dai , Wei Wei

Machine learning shows great potential in virtual screening for drug discovery. Current efforts on accelerating docking-based virtual screening do not consider using existing data of other previously developed targets. To make use of the…

Machine Learning · Computer Science 2021-12-14 Zijing Liu , Xianbin Ye , Xiaomin Fang , Fan Wang , Hua Wu , Haifeng Wang

To accelerate software development, developers frequently search and reuse existing code snippets from a large-scale codebase, e.g., GitHub. Over the years, researchers proposed many information retrieval based models for code search, but…

Software Engineering · Computer Science 2022-02-23 Chao Liu , Xin Xia , David Lo , Zhiwei Liu , Ahmed E. Hassan , Shanping Li

As large language models (LLMs) become integral to applications such as question answering and content creation, reliable content attribution has become increasingly important. Watermarking is a promising approach, but most existing methods…

Cryptography and Security · Computer Science 2026-05-11 Ya Jiang , Massieh Kordi Boroujeny , Surender Suresh Kumar , Kai Zeng

Large reasoning models (LRMs), such as OpenAI-o1 and DeepSeek-R1, demonstrate impressive long-horizon reasoning capabilities. However, their reliance on static internal knowledge limits their performance on complex, knowledge-intensive…

Computation and Language · Computer Science 2025-10-14 Xiaoxi Li , Jiajie Jin , Guanting Dong , Hongjin Qian , Yongkang Wu , Ji-Rong Wen , Yutao Zhu , Zhicheng Dou

Even for a conservative estimate, 80% of enterprise data reside in unstructured files, stored in data lakes that accommodate heterogeneous formats. Classical search engines can no longer meet information seeking needs, especially when the…

Computation and Language · Computer Science 2024-06-06 Qiang Sun , Yuanyi Luo , Wenxiao Zhang , Sirui Li , Jichunyang Li , Kai Niu , Xiangrui Kong , Wei Liu

The ever-increasing size of language models curtails their widespread availability to the community, thereby galvanizing many companies into offering access to large language models through APIs. One particular type, suitable for dense…

Information Retrieval · Computer Science 2023-07-10 Ehsan Kamalloo , Xinyu Zhang , Odunayo Ogundepo , Nandan Thakur , David Alfonso-Hermelo , Mehdi Rezagholizadeh , Jimmy Lin

This paper introduces an open source platform to support the rapid development of computer vision applications at scale. The platform puts the efficient data development at the center of the machine learning development process, integrates…

Artificial Intelligence · Computer Science 2021-12-01 Phoenix X. Huang , Wenze Hu , William Brendel , Manmohan Chandraker , Li-Jia Li , Xiaoyu Wang

Each claim in a research paper requires all relevant prior knowledge to be discovered, assimilated, and appropriately cited. However, despite the availability of powerful search engines and sophisticated text editing software, discovering…

Information Retrieval · Computer Science 2020-05-12 Onur Gökçe , Jonathan Prada , Nikola I. Nikolov , Nianlong Gu , Richard H. R. Hahnloser

Vision-Language Models have made significant progress on many perception-focused tasks. However, their progress on reasoning-focused tasks remains limited due to the lack of high-quality and diverse training data. In this work, we aim to…

Computer Vision and Pattern Recognition · Computer Science 2025-03-18 Yiming Jia , Jiachen Li , Xiang Yue , Bo Li , Ping Nie , Kai Zou , Wenhu Chen

Existing information retrieval (IR) models often assume a homogeneous format, limiting their applicability to diverse user needs, such as searching for images with text descriptions, searching for a news article with a headline image, or…

Computer Vision and Pattern Recognition · Computer Science 2023-11-30 Cong Wei , Yang Chen , Haonan Chen , Hexiang Hu , Ge Zhang , Jie Fu , Alan Ritter , Wenhu Chen

We introduce Docling, an easy-to-use, self-contained, MIT-licensed, open-source toolkit for document conversion, that can parse several types of popular document formats into a unified, richly structured representation. It is powered by…

Assessing the veracity of online content has become increasingly critical. Large language models (LLMs) have recently enabled substantial progress in automated veracity assessment, including automated fact-checking and claim verification…

Computation and Language · Computer Science 2026-04-14 Yupeng Cao , Chengyang He , Yangyang Yu , Ping Wang , K. P. Subbalakshmi

In the biomedical domain, visualizing the document embeddings of an extensive corpus has been widely used in information-seeking tasks. However, three key challenges with existing visualizations make it difficult for clinicians to find…

Human-Computer Interaction · Computer Science 2025-04-09 Rui Qiu , Yamei Tu , Po-Yin Yen , Han-Wei Shen

Thanks to recent advancements in machine learning, vector-based methods have been adopted in many modern information retrieval (IR) systems. While showing promising retrieval performance, these approaches typically fail to explain why a…

Information Retrieval · Computer Science 2023-01-18 Boqi Chen , Kua Chen , Yujing Yang , Afshin Amini , Bharat Saxena , Cecilia Chávez-García , Majid Babaei , Amir Feizpour , Dániel Varró

We explore a matrix-space model, that is a natural extension to the vector space model for Information Retrieval. Each document can be represented by a matrix that is based on document extracts (e.g. sentences, paragraphs, sections). We…

Information Retrieval · Computer Science 2007-05-23 Ioannis Antonellis , Efstratios Gallopoulos

Recent advancements in retrieval-augmented generation (RAG) have demonstrated impressive performance in the question-answering (QA) task. However, most previous works predominantly focus on text-based answers. While some studies address…

Information Retrieval · Computer Science 2025-02-10 Zhengyuan Zhu , Daniel Lee , Hong Zhang , Sai Sree Harsha , Loic Feujio , Akash Maharaj , Yunyao Li

The development of visual analytics (VA) systems has traditionally been a labor-intensive process, balancing design methodologies with complex software engineering practices. In domain-specific fields like urban VA, this challenge is…

Human-Computer Interaction · Computer Science 2026-04-23 Lucas Alexandre , João Rulff , Talisson Souza , Gustavo Moreira , Daniel de Oliveira , Claudio Silva , Fabio Miranda , Marcos Lage