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The high performance of tree ensemble classifiers benefits from a large set of rules, which, in turn, makes the models hard to understand. To improve interpretability, existing methods extract a subset of rules for approximation using model…

Machine Learning · Computer Science 2025-01-03 Zhen Li , Weikai Yang , Jun Yuan , Jing Wu , Changjian Chen , Yao Ming , Fan Yang , Hui Zhang , Shixia Liu

Graphs offer a generic abstraction for modeling entities, and the interactions and relationships between them. Most real world graphs, such as social and cooperation networks evolve over time, and exploring their evolution may reveal…

Social and Information Networks · Computer Science 2023-11-09 Evangelia Tsoukanara , Georgia Koloniari , Evaggelia Pitoura

We construct algorithms and topological invariants that allow us to distinguish the topological type of a surface, as well as functions and vector fields for their topological equivalence. In the first part (arXiv:2501.15657), we discused…

Dynamical Systems · Mathematics 2025-02-04 Alexandr Prishlyak

The Reeb graph has been utilized in various applications including the analysis of scalar fields. Recently, research has been focused on using topological signatures such as the Reeb graph to compare multiple scalar fields by defining…

Computational Geometry · Computer Science 2022-10-20 Brian Bollen , Erin Chambers , Joshua A. Levine , Elizabeth Munch

The Jacobi set of a bivariate scalar field is the set of points where the gradients of the two constituent scalar fields align with each other. It captures the regions of topological changes in the bivariate field. The Jacobi set is a…

Numerical Analysis · Mathematics 2024-07-08 Dhruv Meduri , Mohit Sharma , Vijay Natarajan

We use the notion of topological data analysis to compare metrics on data sets. We provide two different motivating examples for this. The first of these is a point cloud data set that has $\mathbb{R}^2$ as its ambient space, and is…

General Topology · Mathematics 2015-03-17 Scott Balchin , Etienne Pillin

The collection of large, complex datasets has become common across a wide variety of domains. Visual analytics tools increasingly play a key role in exploring and answering complex questions about these large datasets. However, many…

Human-Computer Interaction · Computer Science 2020-06-19 David Borland , Wenyuan Wang , Jonathan Zhang , Joshua Shrestha , David Gotz

Living systems exhibit complex yet organized behavior on multiple spatiotemporal scales. To investigate the nature of multiscale coordination in living systems, one needs a meaningful and systematic way to quantify the complex dynamics, a…

Adaptation and Self-Organizing Systems · Physics 2020-03-11 Mengsen Zhang , William D. Kalies , J. A. Scott Kelso , Emmanuelle Tognoli

Identifying and comparing topological features, particularly cycles, across different topological objects remains a fundamental challenge in persistent homology and topological data analysis. This work introduces a novel framework for…

Quantitative Methods · Quantitative Biology 2025-12-16 Sixtus Dakurah

Topological deep learning is a rapidly growing field that pertains to the development of deep learning models for data supported on topological domains such as simplicial complexes, cell complexes, and hypergraphs, which generalize many…

Topological simplification of scalar and vector fields is well-established as an effective method for analysing and visualising complex data sets. For multi-field data, topological analysis requires simultaneous advances both mathematically…

Computational Geometry · Computer Science 2015-09-16 Amit Chattopadhyay , Hamish Carr , David Duke , Zhao Geng , Osamu Saeki

Relevant language describing visual features in charts can be useful for authoring captions and summaries about the charts to help with readers' takeaways. To better understand the interplay between concepts that describe visual features…

Human-Computer Interaction · Computer Science 2023-08-04 Dennis Bromley , Vidya Setlur

Topological Data Analysis (TDA) provides tools to describe the shape of data, but integrating topological features into deep learning pipelines remains challenging, especially when preserving local geometric structure rather than…

Machine Learning · Computer Science 2026-04-21 Elena Xinyi Wang , Arnur Nigmetov , Dmitriy Morozov

This system paper presents the Topology ToolKit (TTK), a software platform designed for topological data analysis in scientific visualization. TTK provides a unified, generic, efficient, and robust implementation of key algorithms for the…

Graphics · Computer Science 2019-07-18 Julien Tierny , Guillaume Favelier , Joshua A. Levine , Charles Gueunet , Michael Michaux

Effective visualization retrieval necessitates a clear definition of similarity. Despite the growing body of work in specialized visualization retrieval systems, a systematic approach to understanding visualization similarity remains…

Human-Computer Interaction · Computer Science 2026-04-16 Huyen N. Nguyen , Nils Gehlenborg

This paper introduces and demonstrates a computational pipeline for the statistical analysis of shape graph datasets, namely geometric networks embedded in 2D or 3D spaces. Unlike traditional abstract graphs, our purpose is not only to…

Machine Learning · Computer Science 2026-02-19 Murad Hossen , Demetrio Labate , Nicolas Charon

Current and upcoming cosmological surveys will produce unprecedented amounts of high-dimensional data, which require complex high-fidelity forward simulations to accurately model both physical processes and systematic effects which describe…

Cosmology and Nongalactic Astrophysics · Physics 2025-08-11 Aizhan Akhmetzhanova , Carolina Cuesta-Lazaro , Siddharth Mishra-Sharma

Temporal networks are commonly used to represent dynamical complex systems like social networks, simultaneous firing of neurons, human mobility or public transportation. Their dynamics may evolve on multiple time scales characterising for…

Physics and Society · Physics 2024-02-27 Elsa Andres , Alain Barrat , Márton Karsai

Spatial networks are ubiquitous in social, geographical, physical, and biological applications. To understand the large-scale structure of networks, it is important to develop methods that allow one to directly probe the effects of space on…

Social and Information Networks · Computer Science 2020-09-23 Michelle Feng , Mason A. Porter

The Euler characteristic (EC) is a powerful topological descriptor that can be used to quantify the shape of data objects that are represented as fields/manifolds. Fast methods for computing the EC are required to enable processing of…

Computational Geometry · Computer Science 2024-04-26 Daniel J. Laky , Victor M. Zavala