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Related papers: Classical nucleation and growth of DNA-programmed …

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We investigate the self-assembly (crystallisation) of particles with hard cores and isotropic, square-well interactions, using a Monte Carlo scheme to simulate overdamped Langevin dynamics. We measure correlation and response functions…

Soft Condensed Matter · Physics 2015-03-19 Daphne Klotsa , Robert L. Jack

We study the self-assembly of branching-chain networks and crystals in a binary colloidal system with tunable interactions. The particle positions are extracted from microscope images and order parameters are extracted by image processing…

Soft Condensed Matter · Physics 2022-07-19 Hauke Carstensen , Anne Krämer , Vassilios Kapaklis , Max Wolff

We present a self-contained theory for the mechanical response of DNA in single molecule experiments. Our model is based on a 1D continuum description of the DNA molecule and accounts both for its elasticity and for DNA-DNA electrostatic…

Biomolecules · Quantitative Biology 2015-05-13 N. Clauvelin , B. Audoly , S. Neukirch

We propose a model that can account for the experimentally observed phase behavior of DNA-nanoparticle assemblies (R. Jin et al., JACS 125, 1643 (2003); T. A. Taton et al., Science 289, 1757 (2000)). The binding of DNA-coated nano-particles…

Soft Condensed Matter · Physics 2007-05-23 D. B. Lukatsky , Daan Frenkel

According to classical nucleation theory, a crystal grows from a small nucleus that already bears the symmetry of its end phase - but experiments with colloids now reveal that, from an amorphous precursor, crystallites with different…

Materials Science · Physics 2014-07-15 László Gránásy , Gyula I. Tóth

We assemble charged colloidal spheres at deliberately chosen locations on a charged unstructured glass substrate utilizing ion exchange based electro-osmotic micro-pumps. Using microscopy, a simple scaling theory and Brownian Dynamics…

Soft Condensed Matter · Physics 2017-04-05 Ran Niu , Erdal C. Oğuz , Hannah Müller , Alexander Reinmüller , Denis Botin , Hartmut Löwen , Thomas Palberg

In order to optimize a self-assembly reaction, it is essential to understand the factors that govern its pathway. Here, we examine the influence of nucleation pathways in a model system for addressable, multicomponent self-assembly based on…

Soft Condensed Matter · Physics 2018-08-01 Martin Sajfutdinow , William M. Jacobs , Aleks Reinhardt , Christoph Schneider , David M. Smith

Formation of monodispersed colloidal particles is a complex process: nuclei, produced rapidly in a supersaturated solution, grow to nanosize primary particles, which then aggregate (coagulate) to form much larger final colloids. This paper…

Materials Science · Physics 2010-09-22 Jongsoon Park , Vladimir Privman

Classical theories of crystal nucleation and growth from the liquid assume activated processes that are interface limited, with the atoms individually joining the growing interface by jumps that occur at a rate that is determined by the…

Atomic Physics · Physics 2023-01-02 Fangzheng Chen , Zohar Nussinov , K. F. Kelton

Nucleation and growth (N&G) - the emergence of a new phase within an initially homogeneous one - is one of the most important physical phenomena by which gas-liquid, liquid-liquid and solid-liquid phase separation takes place. Accordingly,…

Soft Condensed Matter · Physics 2022-03-23 Hamed Almohammadi , Sandra Martinek , Ye Yuan , Peter Fischer , Raffaele Mezzenga

An important goal of self-assembly is to achieve a preprogrammed structure with high fidelity. Here, we control the valence of DNA-functionalized emulsions to make linear and branched model polymers, or `colloidomers'. The distribution of…

Soft Condensed Matter · Physics 2018-10-03 Angus McMullen , Miranda Holmes-Cerfon , Francesco Sciortino , Alexander Y. Grosberg , Jasna Brujic

Structural aspects of crystal nucleation in undercooled liquids are explored using a nonlinear hydrodynamic theory of crystallization proposed recently [G. I. Toth et al., J. Phys.: Condens. Matter 26, 055001 (2014)], which is based on…

Materials Science · Physics 2017-05-24 Frigyes Podmaniczky , Gyula I. Toth , Gyorgy Tegze , Laszlo Granasy

We carry out molecular dynamics (MD) and Monte Carlo (MC) simulations to characterize nucleation in liquid clusters of 600 Lennard-Jones particles over a broad range of temperatures. We use the formalism of mean first-passage times to…

Materials Science · Physics 2016-10-05 Shahrazad M. A. Malek , Gregory P. Morrow , Ivan Saika-Voivod

Developing construction methods of materials tailored for given applications with absolute control over building block placement poses an immense challenge. DNA-coated colloids offer the possibility of realising programmable self-assembly,…

Soft Condensed Matter · Physics 2020-05-22 Xiuyang Xia , Hao Hu , Massimo Pica Ciamarra , Ran Ni

Colloidal particles with DNA `legs' that can bind reversibly to receptors on a surface can be made to `walk' if there is a gradient in receptor concentration. We use a combination of theory and Monte Carlo simulations to explore how…

Under prolonged starvation, the nucleoid of E. coli bacteria forms nanocrystalline complexes with the protein Dps. By one hypothesis, this effect is considered to be a manifestation of a general strategy of self-preservation of living…

Soft Condensed Matter · Physics 2015-10-28 Dmitry O. Sinitsyn , Yurii F. Krupyanskii

Crystallization has long been the subject of research as one of the basic ways in which solid materials are constructed. In particular, the nucleation stage has not been isolated, thus has been predicted through many calculations and…

Materials Science · Physics 2021-01-26 Kyoung Hwan Choi , Da Young Hwang , Dong Hack Suh

In this letter, we characterize experimentally the diffusiophoretic motion of colloids and lambda- DNA toward higher concentration of solutes, using microfluidic technology to build spatially- and temporally-controlled concentration…

Soft Condensed Matter · Physics 2010-04-09 J. Palacci , B. Abecassis , C. Cottin-Bizonne , C. Ybert , L. Bocquet

Concentrated solutions of short blunt-ended DNA duplexes, down to 6 base pairs, are known to order into the nematic liquid crystal phase. This self-assembly is due to the stacking interactions between the duplex terminals that promotes…

Soft Condensed Matter · Physics 2015-05-30 Cristiano De Michele , Tommaso Bellini , Francesco Sciortino

Studying the crystallization process of silicon is a challenging task since empirical potentials are not able to reproduce well the properties of both semiconducting solid and metallic liquid. On the other hand, nucleation is a rare event…

Computational Physics · Physics 2019-01-10 Luigi Bonati , Michele Parrinello
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