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Biological systems, from a cell to the human brain, are inherently complex. A powerful representation of such systems, described by an intricate web of relationships across multiple scales, is provided by complex networks. Recently, several…

Quantitative Methods · Quantitative Biology 2018-02-06 M. De Domenico

The behaviour of a system of ion channels formed across the cell membrane is presented. The infinite number of channels with an infinite coupling is introduced first as a reference point for the detailed derivation of the…

Biological Physics · Physics 2007-05-23 Adam Rycerz

Consider a lipid membrane with a free exposed edge. The energy describing this membrane is quadratic in the extrinsic curvature of its geometry; that describing the edge is proportional to its length. In this note we determine the boundary…

Soft Condensed Matter · Physics 2009-11-07 R. Capovilla , J. Guven , J. A. Santiago

Bridging the gap between atomistic detail and continuum mechanics is a central challenge in modeling biological membranes, particularly for mesoscopic phenomena spanning large length and time scales. In this work, we introduce a new,…

Soft Condensed Matter · Physics 2026-03-02 Pietro Sillano , Siewert-Jan Marrink , Timon Idema

Optomechanical arrays made of structured flexible dielectrics are a promising system for exploring quantum and many-body optomechanical phenomena. We generalize investigations of the optomechanical properties of periodic arrays of…

Quantum Physics · Physics 2016-11-10 Bhagya Nair , André Xuereb , Aurélien Dantan

The present paper considers the flow of micropolar fluid through a membrane modeled as a swarm of solid cylindrical particles with porous layer using the cell model technique. Traditional boundary conditions on hypothetical cell surface…

Fluid Dynamics · Physics 2019-03-21 D. Yu. Khanukaeva , A. N. Filippov , P. K. Yadav , A. Tiwari

We consider P systems with a linear membrane structure working on objects over a unary alphabet using sets of rules resembling homomorphisms. Such a restricted variant of P systems allows for a unique minimal representation of the generated…

Formal Languages and Automata Theory · Computer Science 2009-07-30 Rudolf Freund , Andreas Klein , Martin Kutrib

A bio tissue model consisting of multilayer spherical cells including four nested radial domains (nucleus, nuclear membrane, cytoplasm and plasma membrane) is worked out to derive the cell heating dynamics in presence of membrane…

Biological Physics · Physics 2015-01-27 V. Pierro , A. De Vita , R. P. Croce , I. M. Pinto

Biological cell suspensions are known to show dielectric dispersions due to the Maxwell-Wagner mechanism. Many examples are summarized in a number of papers by Schwan [7, 9, 10]. By the application of an appropriate analysis to the…

Biological Physics · Physics 2007-05-23 Simona Blanca Savescu

This study develops an equation for describing three-dimensional membrane transformation through proliferation of its component cells regulated by morphogen density distributions on the membrane. The equation is developed in a…

Other Quantitative Biology · Quantitative Biology 2016-05-09 Hiroshi C. Ito

In this paper we present the results of a large-scale numerical investigation of structural properties of a model of cell membrane, simulated as a bilayer of flexible molecules in vacuum. The study was performed by carrying out extensive…

Biological Physics · Physics 2009-11-07 G. La Penna , S. Letardi , V. Minicozzi , S. Morante , G. C. Rossi , G. Salina

This chapter summarizes several approaches combining theory, simulation and experiment that aim for a better understanding of phenomena in lipid bilayers and membrane protein systems, covering topics such as lipid rafts, membrane mediated…

Biological Physics · Physics 2014-12-17 Markus Deserno , Kurt Kremer , Harald Paulsen , Christine Peter , Friederike Schmid

Biological membranes and vesicles play a central role in living systems, forming dynamic interfaces that regulate cellular organization and function. Classical descriptions of membrane mechanics that are rooted in equilibrium statistical…

Soft Condensed Matter · Physics 2026-02-24 Sreekanth Ramesh , Prashant K. Purohit , Yashashree Kulkarni

The electrical properties of extracellular space around neurons are important to understand the genesis of extracellular potentials, as well as for localizing neuronal activity from extracellular recordings. However, the exact nature of…

Diffusion is a fundamental phenomenon that occurs ubiquitously in nature and remains the subject of continuous research interest. Understanding diffusion is a key to understanding leaving systems. In this Chapter, I discuss diffusion of…

Soft Condensed Matter · Physics 2018-10-15 Svyatoslav Kondrat

We theoretically study an optomechanical system, which consists of a two-sided cavity and a mechanical membrane that is placed outside of it. The membrane is positioned close to one of its mirrors, and the cavity is coupled to the external…

Quantum Physics · Physics 2021-06-09 A. K. Tagantsev , E. S. Polzik

For many biotechnological applications it would be useful to better understand the effects produced by electric fields on lipid membranes. This review discusses several aspects of the electrostatic properties of a planar lipid membrane with…

Soft Condensed Matter · Physics 2014-11-25 Falko Ziebert , David Lacoste

We investigate pores in fluid membranes by molecular dynamics simulations of an amphiphile-solvent mixture, using a molecular coarse-grained model. The amphiphilic membranes self-assemble into a lamellar stack of amphiphilic bilayers…

Soft Condensed Matter · Physics 2009-11-11 Claire Loison , Michel Mareschal , Friederike Schmid

We present Monte Carlo simulations of an ultra coarse-grained lipid bilayer with different number of lipids on both leaflets. In the simulations, we employ a new method for measuring the elastic parameters of the membrane, including the…

Soft Condensed Matter · Physics 2025-05-20 Oded Farago

A broad range of membrane proteins display anomalous diffusion on the cell surface. Different methods provide evidence for obstructed subdiffusion and diffusion on a fractal space, but the underlying structure inducing anomalous diffusion…

Biological Physics · Physics 2017-03-15 Sanaz Sadegh , Jenny L. Higgins , Patrick C. Mannion , Michael M. Tamkun , Diego Krapf
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