English
Related papers

Related papers: Predicting the hosts of prokaryotic viruses using …

200 papers

Hypergraphs can model higher-order relationships among data objects that are found in applications such as social networks and bioinformatics. However, recent studies on hypergraph learning that extend graph convolutional networks to…

Machine Learning · Computer Science 2024-05-29 Yumeng Song , Yu Gu , Tianyi Li , Jianzhong Qi , Zhenghao Liu , Christian S. Jensen , Ge Yu

Recently, Graph Convolutional Network (GCN) has been widely used in Hyperspectral Image (HSI) classification due to its satisfactory performance. However, the number of labeled pixels is very limited in HSI, and thus the available…

Computer Vision and Pattern Recognition · Computer Science 2023-05-03 Wentao Yu , Sheng Wan , Guangyu Li , Jian Yang , Chen Gong

Graph embedding is an important approach for graph analysis tasks such as node classification and link prediction. The goal of graph embedding is to find a low dimensional representation of graph nodes that preserves the graph information.…

Machine Learning · Computer Science 2019-08-27 Mahsa Ghorbani , Mahdieh Soleymani Baghshah , Hamid R. Rabiee

The recently proposed Graph Convolutional Networks (GCNs) have achieved significantly superior performance on various graph-related tasks, such as node classification and recommendation. However, currently researches on GCN models usually…

Machine Learning · Computer Science 2022-03-31 Hao Chen , Zhong Huang , Yue Xu , Zengde Deng , Feiran Huang , Peng He , Zhoujun Li

Heterogeneous graph neural networks (HGNNs) have demonstrated strong capability in modeling complex semantics across multi-type nodes and relations. However, their scalability to large-scale graphs remains challenging due to structural…

Machine Learning · Computer Science 2025-12-12 Fuyan Ou , Siqi Ai , Yulin Hu

Graph Convolutional Networks (GCNs) have recently become the primary choice for learning from graph-structured data, superseding hash fingerprints in representing chemical compounds. However, GCNs lack the ability to take into account the…

Machine Learning · Computer Science 2020-07-03 Tomasz Danel , Przemysław Spurek , Jacek Tabor , Marek Śmieja , Łukasz Struski , Agnieszka Słowik , Łukasz Maziarka

Neural message passing algorithms for semi-supervised classification on graphs have recently achieved great success. However, for classifying a node these methods only consider nodes that are a few propagation steps away and the size of…

Machine Learning · Computer Science 2022-04-06 Johannes Gasteiger , Aleksandar Bojchevski , Stephan Günnemann

In this paper, we extend a model of host-parasite co-evolution to incorporate the semi-conservative nature of DNA replication for both the host and the parasite. We find that the optimal mutation rate for the semi-conservative and…

Populations and Evolution · Quantitative Biology 2009-11-10 Yisroel Brumer , Eugene I. Shakhnovich

In this paper, we propose the Graph-Learning-Dual Graph Convolutional Neural Network called GLDGCN based on the classic Graph Convolutional Neural Network(GCN) by introducing dual convolutional layer and graph learning layer. We apply…

Machine Learning · Computer Science 2024-04-26 Zibin Huang , Jun Xian

Recently, graph convolutional network (GCN) has been widely used for semi-supervised classification and deep feature representation on graph-structured data. However, existing GCN generally fails to consider the local invariance constraint…

Computer Vision and Pattern Recognition · Computer Science 2018-09-27 Bo Jiang , Doudou Lin

Graph Convolutional Networks (GCNs) have been successfully applied to analyze non-grid data, where the classical convolutional neural networks (CNNs) cannot be directly used. One similarity shared by GCNs and CNNs is the requirement of…

Computer Vision and Pattern Recognition · Computer Science 2020-06-04 Qikui Zhu , Bo Du , Pingkun Yan

Graph Convolutional Networks (GCNs) have emerged as the state-of-the-art deep learning model for representation learning on graphs. It is challenging to accelerate training of GCNs, due to (1) substantial and irregular data communication to…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-09 Hanqing Zeng , Viktor Prasanna

Motivation: Viruses represent the most abundant biological entities on the planet and play vital roles in diverse ecosystems. Cataloging viruses across various environments is essential for understanding their properties and functions.…

Genomics · Quantitative Biology 2025-04-09 Cheng Peng , Jiayu Shang , Jiaojiao Guan , Yanni Sun

To read the final version please go to IEEE TGRS on IEEE Xplore. Convolutional neural networks (CNNs) have been attracting increasing attention in hyperspectral (HS) image classification, owing to their ability to capture spatial-spectral…

Computer Vision and Pattern Recognition · Computer Science 2021-07-07 Danfeng Hong , Lianru Gao , Jing Yao , Bing Zhang , Antonio Plaza , Jocelyn Chanussot

Many real-world data can be represented as heterogeneous graphs with different types of nodes and connections. Heterogeneous graph neural network model aims to embed nodes or subgraphs into low-dimensional vector space for various…

Artificial Intelligence · Computer Science 2024-12-24 Xinjun Cai , Jiaxing Shang , Fei Hao , Dajiang Liu , Linjiang Zheng

Addressing the challenge of limited labeled data in clinical settings, particularly in the prediction of fatty liver disease, this study explores the potential of graph representation learning within a semi-supervised learning framework.…

Machine Learning · Computer Science 2024-03-06 So Yeon Kim , Sehee Wang , Eun Kyung Choe

Graph Convolutional Network (GCN) is an emerging technique for information retrieval (IR) applications. While GCN assumes the homophily property of a graph, real-world graphs are never perfect: the local structure of a node may contain…

Machine Learning · Computer Science 2021-06-08 Fuli Feng , Weiran Huang , Xiangnan He , Xin Xin , Qifan Wang , Tat-Seng Chua

The information diffusion performance of GCN and its variant models is limited by the adjacency matrix, which can lower their performance. Therefore, we introduce a new framework for graph convolutional networks called Hybrid…

Machine Learning · Computer Science 2023-04-03 Zhi Yang , Kang Li , Haitao Gan , Zhongwei Huang , Ming Shi

The graph convolution network (GCN) is a widely-used facility to realize graph-based semi-supervised learning, which usually integrates node features and graph topologic information to build learning models. However, as for multi-label…

Machine Learning · Computer Science 2019-07-15 Kaisheng Gao , Jing Zhang , Cangqi Zhou

Heterogeneous molecular entities and their interactions, commonly depicted as a network, are crucial for advancing our systems-level understanding of biology. With recent advancements in high-throughput data generation and a significant…

Quantitative Methods · Quantitative Biology 2026-03-18 Kishan KC , Rui Li , Paribesh Regmi , Anne R. Haake