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Named entity recognition (NER) is a fundamental part of extracting information from documents in biomedical applications. A notable advantage of NER is its consistency in extracting biomedical entities in a document context. Although…

Computation and Language · Computer Science 2022-10-25 Minbyul Jeong , Jaewoo Kang

When combined with In-Context Learning, a technique that enables models to adapt to new tasks by incorporating task-specific examples or demonstrations directly within the input prompt, autoregressive language models have achieved good…

Computation and Language · Computer Science 2024-10-18 Enzo Shiraishi , Raphael Y. de Camargo , Henrique L. P. Silva , Ronaldo C. Prati

Named entity recognition (NER) stands as a fundamental and pivotal task within the realm of Natural Language Processing. Particularly within the domain of Biomedical Method NER, this task presents notable challenges, stemming from the…

Computation and Language · Computer Science 2024-07-01 Chen Tang , Bohao Yang , Kun Zhao , Bo Lv , Chenghao Xiao , Frank Guerin , Chenghua Lin

Named entity recognition (NER) is usually developed and tested on text from well-written sources. However, in intelligent voice assistants, where NER is an important component, input to NER may be noisy because of user or speech recognition…

Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

Information Retrieval · Computer Science 2024-02-07 Martin Lentschat , Cyril Labbé , Ran Cheng

Recent named entity recognition (NER) models often rely on human-annotated datasets, requiring the significant engagement of professional knowledge on the target domain and entities. This research introduces an ask-to-generate approach that…

Computation and Language · Computer Science 2022-11-08 Hyunjae Kim , Jaehyo Yoo , Seunghyun Yoon , Jinhyuk Lee , Jaewoo Kang

Named entity recognition (NER) is a vital task in spoken language understanding, which aims to identify mentions of named entities in text e.g., from transcribed speech. Existing neural models for NER rely mostly on dedicated word-level…

Computation and Language · Computer Science 2019-09-24 Abdalghani Abujabal , Judith Gaspers

Named Entity Recognition (NER) is a sub-task of Natural Language Processing (NLP) that distinguishes entities from unorganized text into predefined categorization. In recent years, a lot of Bangla NLP subtasks have received quite a lot of…

Computation and Language · Computer Science 2024-01-31 Niloy Farhan , Saman Sarker Joy , Tafseer Binte Mannan , Farig Sadeque

Training a neural network-based biomedical named entity recognition (BioNER) model usually requires extensive and costly human annotations. While several studies have employed multi-task learning with multiple BioNER datasets to reduce…

Computation and Language · Computer Science 2024-12-31 Yu Yin , Hyunjae Kim , Xiao Xiao , Chih Hsuan Wei , Jaewoo Kang , Zhiyong Lu , Hua Xu , Meng Fang , Qingyu Chen

Continual Named Entity Recognition (CNER) is a burgeoning area, which involves updating an existing model by incorporating new entity types sequentially. Nevertheless, continual learning approaches are often severely afflicted by…

Computation and Language · Computer Science 2023-10-24 Duzhen Zhang , Wei Cong , Jiahua Dong , Yahan Yu , Xiuyi Chen , Yonggang Zhang , Zhen Fang

In the domain of Natural Language Processing (NLP), Named Entity Recognition (NER) stands out as a pivotal mechanism for extracting structured insights from unstructured text. This manuscript offers an exhaustive exploration into the…

Computation and Language · Computer Science 2023-09-26 Kalyani Pakhale

Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

Named entity recognition (NER) is the very first step in the linguistic processing of any new domain. It is currently a common process in BioNLP on English clinical text. However, it is still in its infancy in other major languages, as it…

Computation and Language · Computer Science 2019-12-20 Fernando Sánchez León , Ana González Ledesma

This paper presents a comprehensive study to efficiently build named entity recognition (NER) systems when a small number of in-domain labeled data is available. Based upon recent Transformer-based self-supervised pre-trained language…

Computation and Language · Computer Science 2021-01-01 Jiaxin Huang , Chunyuan Li , Krishan Subudhi , Damien Jose , Shobana Balakrishnan , Weizhu Chen , Baolin Peng , Jianfeng Gao , Jiawei Han

We present a weakly-supervised data augmentation approach to improve Named Entity Recognition (NER) in a challenging domain: extracting biomedical entities (e.g., proteins) from the scientific literature. First, we train a neural NER (NNER)…

Machine Learning · Computer Science 2019-06-04 Joel Mathew , Shobeir Fakhraei , José Luis Ambite

Named-entity recognition (NER) is fundamental to extracting structured information from the >80% of healthcare data that resides in unstructured clinical notes and biomedical literature. Despite recent advances with large language models,…

Computation and Language · Computer Science 2025-08-05 Maziyar Panahi

Specialized transformer-based models for encoding tabular data have gained interest in academia. Although tabular data is omnipresent in industry, applications of table transformers are still missing. In this paper, we study how these…

Artificial Intelligence · Computer Science 2022-09-30 Aneta Koleva , Martin Ringsquandl , Mark Buckley , Rakebul Hasan , Volker Tresp

Multimodal Named Entity Recognition (MNER) is a crucial task for information extraction from social media platforms such as Twitter. Most current methods rely on attention weights to extract information from both text and images but are…

Computer Vision and Pattern Recognition · Computer Science 2023-06-30 Weide Liu , Xiaoyang Zhong , Jingwen Hou , Shaohua Li , Haozhe Huang , Yuming Fang

Federated Named Entity Recognition (FNER) boosts model training within each local client by aggregating the model updates of decentralized local clients, without sharing their private data. However, existing FNER methods assume fixed entity…

Computation and Language · Computer Science 2025-04-01 Duzhen Zhang , Yahan Yu , Chenxing Li , Jiahua Dong , Dong Yu

As a fundamental natural language processing task and one of core knowledge extraction techniques, named entity recognition (NER) is widely used to extract information from texts for downstream tasks. Nested NER is a branch of NER in which…

Computation and Language · Computer Science 2022-04-19 Yifei Yang , Zuchao Li , Hai Zhao