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We initiate a study of locally decodable codes with randomized encoding. Standard locally decodable codes are error correcting codes with a deterministic encoding function and a randomized decoding function, such that any desired message…

Information Theory · Computer Science 2020-01-14 Kuan Cheng , Xin Li , Yu Zheng

Simultaneously modeling source code and natural language has many exciting applications in automated software development and understanding. Pursuant to achieving such technology, we introduce PyMT5, the Python method text-to-text transfer…

Machine Learning · Computer Science 2020-10-08 Colin B. Clement , Dawn Drain , Jonathan Timcheck , Alexey Svyatkovskiy , Neel Sundaresan

Low-discrepancy (LD) sequences have been extensively used as efficient experimental designs across many scientific disciplines. QMCPy (https://qmcsoftware.github.io/QMCSoftware/) is an accessible Python library which provides a unified…

Mathematical Software · Computer Science 2025-10-14 Aleksei G Sorokin

In 2020, Peter Larsen reported flaws in the methods for centrosymmetry parameter computation in the existing molecular dynamics and analysis packages. He proposed an intuitive an mathematically rigorous formulation for centrosymmetry…

Computational Physics · Physics 2026-05-22 Vasily V. Pisarev

Two-dimensional color codes are a promising candidate for fault-tolerant quantum computing, as they have high encoding rates, transversal implementation of logical Clifford gates, and resource-efficient magic state preparation schemes.…

Quantum Physics · Physics 2025-01-29 Seok-Hyung Lee , Andrew Li , Stephen D. Bartlett

Quantum parameter estimation promises a high-precision measurement in theory, however, how to design the optimal scheme in a specific scenario, especially under a practical condition, is still a serious problem that needs to be solved case…

Superconducting quantum processor units (QPUs) are incapable of producing massive datasets for quantum error correction (QEC) because of hardware limitations. Thus, QEC decoders heavily depend on synthetic data from qubit error models.…

Quantum Physics · Physics 2026-04-27 Songhuan He , Yifei Cui , Bo Liu , Kai Guo , Cheng Wang

Protein Fragment Motif Finder (PFMFind) is a system that enables efficient discovery of relationships between short fragments of protein sequences using similarity search. It supports queries based on score matrices and PSSMs obtained…

Quantitative Methods · Quantitative Biology 2013-05-17 Aleksandar Stojmirović , Peter Andreae , Mike Boland , Thomas William Jordan , Vladimir G. Pestov

Scaling up quantum computers to attain substantial speedups over classical computing requires fault tolerance. Conventionally, protocols for fault-tolerant quantum computation demand excessive space overheads by using many physical qubits…

Quantum Physics · Physics 2025-01-29 Hayata Yamasaki , Masato Koashi

Efficient high-performance decoding of topological stabilizer codes has the potential to crucially improve the balance between logical failure rates and the number and individual error rates of the constituent qubits. High-threshold…

The BumpHunter algorithm is widely used in the search for new particles in High Energy Physics analysis. This algorithm offers the advantage of evaluating the local and global p-values of a localized deviation in the observed data without…

High Energy Physics - Experiment · Physics 2023-10-11 Louis Vaslin , Samuel Calvet , Vincent Barra , Julien Donini

I present a Python package developed for fitting Voigt profiles to absorption lines. The software fits multiple components for various atomic lines simultaneously allowing parameters to be tied and fixed. Moreover, the code is able to…

Instrumentation and Methods for Astrophysics · Physics 2018-03-06 Jens-Kristian Krogager

I present libcommute, a C++11/14/17 template library that implements a domain-specific language for easy manipulating of polynomial operators used in the quantum many-body theory, as well as a software development toolkit for exact…

Computational Physics · Physics 2021-12-17 Igor Krivenko

Motivated by the growing demand for low-precision arithmetic in computational science, we exploit lower-precision emulation in Python -- widely regarded as the dominant programming language for numerical analysis and machine learning.…

Machine Learning · Computer Science 2026-02-26 Erin Carson , Xinye Chen

Parity check matrices (PCMs) are used to define linear error correcting codes and ensure reliable information transmission over noisy channels. The set of codewords of such a code is the null space of this binary matrix. We consider the…

Information Theory · Computer Science 2020-05-12 Luís M. S. Russo , Tobias Dietz , José Rui Figueira , Alexandre P. Francisco , Stefan Ruzika

pyspeckit is a toolkit and library for spectroscopic analysis in Python. We describe the pyspeckit package and highlight some of its capabilities, such as interactively fitting a model to data, akin to the historically widely-used splot…

Instrumentation and Methods for Astrophysics · Physics 2022-06-01 Adam Ginsburg , Vlas Sokolov , Miguel de Val-Borro , Erik Rosolowsky , Jaime E. Pineda , Brigitta M. Sipőcz , Jonathan D. Henshaw

To well understand the behavior of quantum error correction codes (QECC) in noise processes, we need to obtain explicit coding maps for QECC. Due to extraordinary amount of computational labor that they entails, explicit coding maps are a…

Quantum Physics · Physics 2022-03-04 Chaobin Liu

A fault-tolerant quantum computer will be supported by a classical decoding system interfacing with quantum hardware to perform quantum error correction. It is important that the decoder can keep pace with the quantum clock speed, within…

Quantum Physics · Physics 2023-03-17 Samuel C. Smith , Benjamin J. Brown , Stephen D. Bartlett

Reed-Muller (RM) codes exhibit good performance under maximum-likelihood (ML) decoding due to their highly-symmetric structure. In this paper, we explore the question of whether the code symmetry of RM codes can also be exploited to achieve…

Information Theory · Computer Science 2018-04-30 Elia Santi , Christian Häger , Henry D. Pfister

There is a need for open-source libraries in emission tomography that (i) use modern and popular backend code to encourage community contributions and (ii) offer support for the multitude of reconstruction techniques available in recent…

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