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In this survey paper, we overview major deep learning methods used in Natural Language Processing (NLP) and source code over the last 35 years. Next, we present a survey of the applications of Artificial Intelligence (AI) for source code,…

Computation and Language · Computer Science 2022-02-11 Erfan Al-Hossami , Samira Shaikh

There has been an increase of interest in code search using natural language. Assessing the performance of such code search models can be difficult without a readily available evaluation suite. In this paper, we present an evaluation…

Software Engineering · Computer Science 2019-10-03 Hongyu Li , Seohyun Kim , Satish Chandra

Software is constantly changing, requiring developers to perform several derived tasks in a timely manner, such as writing a description for the intention of the code change, or identifying the defect-prone code changes. Considering that…

Software Engineering · Computer Science 2023-05-19 Bo Lin , Shangwen Wang , Zhongxin Liu , Yepang Liu , Xin Xia , Xiaoguang Mao

We present ShapeNet: a richly-annotated, large-scale repository of shapes represented by 3D CAD models of objects. ShapeNet contains 3D models from a multitude of semantic categories and organizes them under the WordNet taxonomy. It is a…

Semantic code search is the task of retrieving relevant code snippet given a natural language query. Different from typical information retrieval tasks, code search requires to bridge the semantic gap between the programming language and…

Computation and Language · Computer Science 2022-01-28 Chen Wu , Ming Yan

Recent advances in machine learning have significantly improved the understanding of source code data and achieved good performance on a number of downstream tasks. Open source repositories like GitHub enable this process with rich…

Software Engineering · Computer Science 2022-06-20 Ming Zhu , Aneesh Jain , Karthik Suresh , Roshan Ravindran , Sindhu Tipirneni , Chandan K. Reddy

Artificial intelligence (AI) is increasingly being explored as a tool to support pharmacometric modeling, particularly in addressing the coding challenges associated with NONMEM. In this study, we evaluated the ability of seven AI agents to…

Other Quantitative Biology · Quantitative Biology 2025-07-14 Wenhao Zheng , Wanbing Wang , Carl M. J. Kirkpatrick , Cornelia B. Landersdorfer , Huaxiu Yao , Jiawei Zhou

The explosive growth of AI and machine learning literature -- with venues like NeurIPS and ICLR now accepting thousands of papers annually -- has made comprehensive citation coverage increasingly difficult for researchers. While citation…

Information Retrieval · Computer Science 2026-04-21 Md Toyaha Rahman Ratul , Zhiqian Chen , Kaiqun Fu , Taoran Ji , Lei Zhang

Recent research has achieved impressive results on understanding and improving source code by building up on machine-learning techniques developed for natural languages. A significant advancement in natural-language understanding has come…

Software Engineering · Computer Science 2020-08-19 Aditya Kanade , Petros Maniatis , Gogul Balakrishnan , Kensen Shi

Large language models (LLMs) have become increasingly prominent in academia and industry due to their remarkable performance in diverse applications. As these models evolve with increasing parameters, they excel in tasks like sentiment…

Machine Learning · Computer Science 2023-11-14 Le Chen , Arijit Bhattacharjee , Nesreen K. Ahmed , Niranjan Hasabnis , Gal Oren , Bin Lei , Ali Jannesari

The immense amounts of source code provide ample challenges and opportunities during software development. To handle the size of code bases, developers commonly search for code, e.g., when trying to find where a particular feature is…

Software Engineering · Computer Science 2022-10-06 Luca Di Grazia , Michael Pradel

We present TaskSet, a dataset of tasks for use in training and evaluating optimizers. TaskSet is unique in its size and diversity, containing over a thousand tasks ranging from image classification with fully connected or convolutional…

Machine Learning · Computer Science 2020-04-02 Luke Metz , Niru Maheswaranathan , Ruoxi Sun , C. Daniel Freeman , Ben Poole , Jascha Sohl-Dickstein

Recent advances in code large language models (CodeLLMs) have made them indispensable tools in modern software engineering. However, these models occasionally produce outputs that contain proprietary or sensitive code snippets, raising…

Software Engineering · Computer Science 2025-07-24 Tianlin Li , Yunxiang Wei , Zhiming Li , Aishan Liu , Qing Guo , Xianglong Liu , Dongning Sun , Yang Liu

AI agents have seen widespread adoption in information retrieval for scientific research, giving rise to tools such as Deep Research. However, existing retrieval agents mainly rely on keyword- or embedding-based methods. While effective at…

Computational Engineering, Finance, and Science · Computer Science 2026-05-25 Chenyang Shao , Fengli Xu , Yong Li

Code translation aims to convert code from one programming language to another automatically. It is motivated by the need for multi-language software development and legacy system migration. In recent years, neural code translation has…

Software Engineering · Computer Science 2025-05-13 Xiang Chen , Jiacheng Xue , Xiaofei Xie , Caokai Liang , Xiaolin Ju

Code generation aims to automatically generate code snippets of specific programming language according to natural language descriptions. The continuous advancements in deep learning, particularly pre-trained models, have empowered the code…

Software Engineering · Computer Science 2025-01-24 Zezhou Yang , Sirong Chen , Cuiyun Gao , Zhenhao Li , Xing Hu , Kui Liu , Xin Xia

Machine learning is now used in many applications thanks to its ability to predict, generate, or discover patterns from large quantities of data. However, the process of collecting and transforming data for practical use is intricate. Even…

High-quality labeled datasets play a crucial role in fueling the development of machine learning (ML), and in particular the development of deep learning (DL). However, since the emergence of the ImageNet dataset and the AlexNet model in…

Computer Vision and Pattern Recognition · Computer Science 2021-08-03 Zeyad Emam , Andrew Kondrich , Sasha Harrison , Felix Lau , Yushi Wang , Aerin Kim , Elliot Branson

Software is used in critical applications in our day-to-day life and it is important to ensure its correctness. One popular approach to assess correctness is to evaluate software on tests. If a test fails, it indicates a fault in the…

Software Engineering · Computer Science 2025-04-01 Max Hort , Leon Moonen