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Related papers: Particle detection and tracking with DNA

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Heller et. Al. (Science 311, 508 (2006)) demonstrated the first DNA-CN optical sensor by wrapping a piece of double-stranded DNA around the surface of single-walled carbon nanotubes (CN). This new type of optical device can be placed inside…

Mesoscale and Nanoscale Physics · Physics 2012-09-25 Anh D. Phan , Dustin A. Tracy , N. A. Viet

DNA-interacting proteins have roles multiple processes, many operating as molecular machines which undergo dynamic metastable transitions to bring about their biological function. To fully understand this molecular heterogeneity, DNA and…

Biomolecules · Quantitative Biology 2015-04-15 Adam J. M. Wollman , Helen Miller , Zhaokun Zhou , Mark C. Leake

Particle tracking is a powerful biophysical tool that requires conversion of large video files into position time series, i.e. traces of the species of interest for data analysis. Current tracking methods, based on a limited set of input…

Quantitative Methods · Quantitative Biology 2018-10-09 Jay M. Newby , Alison M. Schaefer , Phoebe T. Lee , M. Gregory Forest , Samuel K. Lai

We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…

Materials Science · Physics 2009-11-10 Thomas Heim , Dominique Deresmes , Dominique Vuillaume

The precise tracking of micron sized colloidal particles - held in the vicinity of each other using optical tweezers - is an elegant way to gain information about the particle-particle pair interaction potential. The accuracy of the method,…

Optics · Physics 2017-09-26 Chi Zhang , Georges Brügger , Frank Scheffold

The next generation of very-short-baseline reactor experiments will require compact detectors operating at surface level and close to a nuclear reactor. This paper presents a new detector concept based on a composite solid scintillator…

Solid-state nanopore and nanopipette sensors are powerful devices for the detection, quantification and structural analysis of biopolymers such as DNA and proteins, especially in carrier-enhanced resistive-pulse sensing. However, hundreds…

Mesoscale and Nanoscale Physics · Physics 2025-10-14 Cengiz J. Khan , Oliver J. Irving , Rand A. Al-Waqfi , Giorgio Ferrari , Tim Albrecht

A new high-precision detector for studying neutrons from beta-delayed neutron emission and direct reaction studies is proposed. The Neutron dEtector with Xn Tracking (NEXT) array is designed to maintain high intrinsic neutron detection…

DNA nanocompartment is a typical DNA-based machine whose function is dependent of molecular collective effect. Fundamental properties of the device have been addressed via electrochemical analysis, fluorescent microscopy, and atomic force…

Biological Physics · Physics 2009-11-11 Song Chang , Youdong Mao , Zhengwei Xie , Chunxiong Luo , Qi Ouyang

DNA nanotechnology uses predictable interactions of nucleic acids to precisely engineer complex nanostructures. Characterizing these self-assembled structures at the single-structure level is crucial for validating their design and…

Biological Physics · Physics 2025-10-21 Wangwei Dong , Zezhou Liu , Ruiyao Liu , Deborah Kuchnir Fygenson , Walter Reisner

Weakly Interacting Massive Particles (WIMPs) may constitute most of the matter in the Universe. The ability to detect the directionality of recoil nuclei will considerably facilitate detection of WIMPs. In this paper we propose a novel type…

Instrumentation and Methods for Astrophysics · Physics 2015-01-13 Andrzej Drukier , Katherine Freese , Alejandro Lopez , David Spergel , Charles Cantor , George Church , Takeshi Sano

In particle physics the simulation of particle transport through detectors requires an enormous amount of computational resources, utilizing more than 50% of the resources of the CERN Worldwide Large Hadron Collider Grid. This challenge has…

High Energy Physics - Experiment · Physics 2021-03-26 Florian Rehm , Sofia Vallecorsa , Kerstin Borras , Dirk Krücker

An introductory review, suitable for the beginning student of high-energy physics or professionals from other fields who may desire familiarity with subatomic-particle detection techniques. Subatomic-particle fundamentals and the basics of…

Instrumentation and Detectors · Physics 2015-07-20 Daniel M. Kaplan , Charles. E. Lane , Kenneth S. Nelson

Particle detectors record the interactions of subatomic particles and their passage through matter. The identification of these particles is necessary for in-depth physics analysis. While particles can be identified by their individual…

Instrumentation and Detectors · Physics 2019-10-23 F. Psihas , E. Niner , M. Groh , R. Murphy , A. Aurisano , A. Himmel , K. Lang , M. D. Messier , A. Radovic , A. Sousa

The DNA sequencing is the process of identifying the exact order of nucleotides within a given DNA molecule. The new portable and relatively inexpensive DNA sequencers, such as Oxford Nanopore MinION, have the potential to move DNA…

Computational Engineering, Finance, and Science · Computer Science 2019-01-09 Steven Y. Ko , Lauren Sassoubre , Jaroslaw Zola

The Standard Model of particle physics makes it possible to simulate complete events for physics signatures and their backgrounds in high energy collisions. Knowledge of how the produced particles interact with the materials in a detector…

High Energy Physics - Phenomenology · Physics 2009-09-25 K. D. Lane , F. E. Paige , T. Skwarnicki , W. J. Womersley

Particle track reconstruction is the most computationally intensive process in nuclear physics experiments. Traditional algorithms use a combinatorial approach that exhaustively tests track measurements ("hits") to identify those that form…

Computer Vision and Pattern Recognition · Computer Science 2022-04-29 Polykarpos Thomadakis , Angelos Angelopoulos , Gagik Gavalian , Nikos Chrisochoides

Proton therapy is nowadays becoming a wide spread clinical practice in cancer therapy and sophisticated treatment planning systems are routinely used to exploit at best the ballistic properties of charged particles. The information on the…

Medical Physics · Physics 2015-05-14 S. Braccini , A. Ereditato , I. Kreslo , U. Moser , C. Pistillo , P. Scampoli , S. Studer

Highly granular pixel detectors allow for increasingly precise measurements of charged particle tracks. Next-generation detectors require that pixel sizes will be further reduced, leading to unprecedented data rates exceeding those foreseen…

The interaction between nano- or micro-sized particles and cell membranes is of crucial importance in many biological and biomedical applications such as drug and gene delivery to cells and tissues. During their cellular uptake, the…