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We consider two minimal mathematical models for cancer dynamics and self-adaptation. We aim to capture the interplay between the rapid progression of cancer growth and the possibility to leverage and enhance self-adaptive defense mechanisms…

Adaptation and Self-Organizing Systems · Physics 2025-03-27 Christian Kuehn

Intelligent agents need a physical understanding of the world to predict the impact of their actions in the future. While learning-based models of the environment dynamics have contributed to significant improvements in sample efficiency…

Machine Learning · Computer Science 2020-05-20 Eric Heiden , David Millard , Hejia Zhang , Gaurav S. Sukhatme

Evolutionary multi-agent systems (EMASs) are very good at dealing with difficult, multi-dimensional problems, their efficacy was proven theoretically based on analysis of the relevant Markov-Chain based model. Now the research continues on…

Neural and Evolutionary Computing · Computer Science 2022-10-25 Mateusz Godzik , Jacek Dajda , Marek Kisiel-Dorohinicki , Aleksander Byrski , Leszek Rutkowski , Patryk Orzechowski , Joost Wagenaar , Jason H. Moore

We envision the Full-Body AI Agent as a comprehensive AI system designed to simulate, analyze, and optimize the dynamic processes of the human body across multiple biological levels. By integrating computational models, machine learning…

Tissues and Organs · Quantitative Biology 2025-08-28 Aoqi Wang , Jiajia Liu , Jianguo Wen , Yangyang Luo , Zhiwei Fan , Liren Yang , Xi Hu , Ruihan Luo , Yankai Yu , Sophia Li , Weiling Zhao , Xiaobo Zhou

Dynamical maps describe general transformations of the state of a physical system, and their iteration can be interpreted as generating a discrete time evolution. Prime examples include classical nonlinear systems undergoing transitions to…

Quantum Physics · Physics 2013-11-19 P. Schindler , M. Müller , D. Nigg , J. T. Barreiro , E. A. Martinez , M. Hennrich , T. Monz , S. Diehl , P. Zoller , R. Blatt

A closer look at nature has recently brought more interest in exploring and utilizing intra-body communication networks composed of cells as intrinsic, perfectly biocompatible infrastructures to deliver therapeutics. Naturally occurring…

Signal Processing · Electrical Eng. & Systems 2022-07-06 Hamid Khoshfekr Rudsari , Mohammad Zoofaghari , Mladen Veletic , Jacob Bergsland , Ilangko Balasingham

In order to grasp the features arising from cellular discreteness and individuality, in large parts of cell tissue modelling agent-based models are favoured. The subclass of off-lattice models allows for a physical motivation of the…

Biological Physics · Physics 2007-06-21 Gernot Schaller , Michael Meyer-Hermann

We consider hexagonal cellular automata with immediate cell neighbourhood and three cell-states. Every cell calculates its next state depending on the integral representation of states in its neighbourhood, i.e. how many neighbours are in…

Artificial Intelligence · Computer Science 2010-11-23 Andrew Adamatzky , Larry Bull , Pierre Collet , Emmanuel Sapin

Training capable Large Language Model (LLM) agents is critically bottlenecked by the high cost and static nature of real-world interaction data. We address this by introducing GenEnv, a framework that establishes a difficulty-aligned…

Computation and Language · Computer Science 2025-12-24 Jiacheng Guo , Ling Yang , Peter Chen , Qixin Xiao , Yinjie Wang , Xinzhe Juan , Jiahao Qiu , Ke Shen , Mengdi Wang

Current research in LLM-based simulation systems lacks comprehensive solutions for modeling real-world court proceedings, while existing legal language models struggle with dynamic courtroom interactions. We present AgentCourt, a…

Computation and Language · Computer Science 2025-06-17 Guhong Chen , Liyang Fan , Zihan Gong , Nan Xie , Zixuan Li , Ziqiang Liu , Chengming Li , Qiang Qu , Hamid Alinejad-Rokny , Shiwen Ni , Min Yang

Tumorigenesis is a complex process that is heterogeneous and affected by numerous sources of variability. This study presents a stochastic extension of a biologically grounded tumor growth model, referred to as the Norton-Simon-Massagu\'e…

Tissues and Organs · Quantitative Biology 2019-03-12 Zehor Belkhatir , Michele Pavon , James C. Mathews , Maryam Pouryahya , Joseph O. Deasy , Larry Norton , Allen R. Tannenbaum

Resistance to chemotherapies, particularly to anticancer treatments, is an increasing medical concern. Among the many mechanisms at work in cancers, one of the most important is the selection of tumor cells expressing resistance genes or…

Analysis of PDEs · Mathematics 2012-07-05 Alexander Lorz , Tommaso Lorenzi , Michael E. Hochberg , Jean Clairambault , Benoit Perthame

Social-ecological systems research aims to understand the nature of social-ecological phenomena, to find ways to foster or manage conditions under which desired phenomena occur or to reduce the negative consequences of undesirable…

Multiagent Systems · Computer Science 2024-06-25 Sonja Radosavljevic , Udita Sanga , Maja Schlüter

Predictive modeling of the evolutionary dynamics of cancer is a challenge issue in computational cancer biology. In this paper, we propose a general mathematical model framework for the evolutionary dynamics of cancer with plasticity and…

Cell Behavior · Quantitative Biology 2020-01-10 Jinzhi Lei

Direct numerical simulations (DNS) are accurate but computationally expensive for predicting materials evolution across timescales, due to the complexity of the underlying evolution equations, the nature of multiscale spatio-temporal…

Machine Learning · Computer Science 2023-12-12 Vivek Oommen , Khemraj Shukla , Saaketh Desai , Remi Dingreville , George Em Karniadakis

Agent-based models have emerged as a promising paradigm for addressing ever increasing complexity of information systems. In its initial days in the 1990s when object-oriented modeling was at its peak, an agent was treated as a special kind…

Artificial Intelligence · Computer Science 2021-12-13 Srinath Srinivasa , Jayati Deshmukh

Device-to-device (D2D) communications is one of the key emerging technologies for the fifth generation (5G) networks and beyond. It enables direct communication between mobile users and thereby extends coverage for devices lacking direct…

Networking and Internet Architecture · Computer Science 2022-01-31 Chaima Ghribi , Elie Cali , Christian Hirsch , Benedikt Jahnel

Large Language Models (LLMs) have demonstrated remarkable capabilities across diverse tasks but remain fundamentally static, unable to adapt their internal parameters to novel tasks, evolving knowledge domains, or dynamic interaction…

This chapter presents the main lines of agent based modeling in the field of medical research. The general diagram consists of a cohort of patients (virtual or real) whose evolution is observed by means of so-called evolution models.…

Artificial Intelligence · Computer Science 2022-05-23 Philippe Saint-Pierre , Romain Demeulemeester , Nadège Costa , Nicolas Savy

We present an Equation/Variable free machine learning (EVFML) framework for the control of the collective dynamics of complex/multiscale systems modelled via microscopic/agent-based simulators. The approach obviates the need for…

Dynamical Systems · Mathematics 2024-11-05 Dimitrios G. Patsatzis , Lucia Russo , Ioannis G. Kevrekidis , Constantinos Siettos