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The Longest Common Substring (LCS) and Longest Palindromic Substring (LPS) are classical problems in computer science, representing fundamental challenges in string processing. Both problems can be solved in linear time using a classical…

Data Structures and Algorithms · Computer Science 2023-09-06 Domenico Cantone , Simone Faro , Arianna Pavone , Caterina Viola

We give an $\mathcal{O}(n \log n)$-time, $\mathcal{O}(n)$-space algorithm for factoring a string into the minimum number of palindromic substrings. That is, given a string $S [1..n]$, in $\mathcal{O}(n \log n)$ time our algorithm returns…

Data Structures and Algorithms · Computer Science 2020-12-15 Gabriele Fici , Travis Gagie , Juha Kärkkäinen , Dominik Kempa

We study the internal dictionary matching (IDM) problem where a dictionary $\mathcal{D}$ containing $d$ substrings of a text $T$ is given, and each query concerns the occurrences of patterns in $\mathcal{D}$ in another substring of $T$. We…

Data Structures and Algorithms · Computer Science 2025-05-16 Jingbang Chen , Jiangqi Dai , Qiuyang Mang , Qingyu Shi , Tingqiang Xu

A string $w$ is called a minimal absent word (MAW) for another string $T$ if $w$ does not occur (as a substring) in $T$ and any proper substring of $w$ occurs in $T$. State-of-the-art data structures for reporting the set $\mathsf{MAW}(T)$…

Data Structures and Algorithms · Computer Science 2022-04-18 Tooru Akagi , Kouta Okabe , Takuya Mieno , Yuto Nakashima , Shunsuke Inenaga

Given a string $T$ of length $n$, a substring $u = T[i..j]$ of $T$ is called a shortest unique substring (SUS) for an interval $[s,t]$ if (a) $u$ occurs exactly once in $T$, (b) $u$ contains the interval $[s,t]$ (i.e. $i \leq s \leq t \leq…

Data Structures and Algorithms · Computer Science 2020-09-15 Takuya Mieno , Dominik Köppl , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of…

Data Structures and Algorithms · Computer Science 2007-05-23 A. H. L. Porto , V. C. Barbosa

Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…

Quantum Physics · Physics 2023-12-29 François Le Gall , Saeed Seddighin

We revisit the problem of finding shortest unique substring (SUS) proposed recently by [6]. We propose an optimal $O(n)$ time and space algorithm that can find an SUS for every location of a string of size $n$. Our algorithm significantly…

Data Structures and Algorithms · Computer Science 2014-01-14 Atalay Mert İleri , M. Oğuzhan Külekci , Bojian Xu

In the longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, and we are asked to find a longest string occurring as a fragment of both $S$ and $T$. This is a classical and well-studied…

Data Structures and Algorithms · Computer Science 2018-07-17 Amihood Amir , Panagiotis Charalampopoulos , Solon P. Pissis , Jakub Radoszewski

In this paper, we explore worst-case solutions for the problems of single and multiple matching on strings in the word RAM model with word length w. In the first problem, we have to build a data structure based on a pattern p of length m…

Data Structures and Algorithms · Computer Science 2015-05-20 Djamal Belazzougui

In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…

Data Structures and Algorithms · Computer Science 2019-12-02 Carl Barton , Ewan Birney , Tomas Fitzgerald

The palindrome pattern matching (pal-matching) is a kind of generalized pattern matching, in which two strings $x$ and $y$ of same length are considered to match (pal-match) if they have the same palindromic structures, i.e., for any…

Data Structures and Algorithms · Computer Science 2023-04-17 Shinya Nagashita , Tomohiro I

Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…

Data Structures and Algorithms · Computer Science 2022-11-01 Laurentius Leonard , Shunsuke Inenaga , Hideo Bannai , Takuya Mieno

A string $w$ is called a minimal absent word (MAW) for a string $S$ if $w$ does not occur as a substring in $S$ and all proper substrings of $w$ occur in $S$. MAWs are well-studied combinatorial string objects that have potential…

Data Structures and Algorithms · Computer Science 2023-08-01 Kouta Okabe , Takuya Mieno , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai

We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $\Sigma$, and a positive integer $k$. The goal is to find all…

Data Structures and Algorithms · Computer Science 2018-11-06 Diptarka Chakraborty , Debarati Das , Michal Koucky

Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…

Data Structures and Algorithms · Computer Science 2014-07-01 Travis Gagie , Danny Hermelin , Gad M. Landau , Oren Weimann

In binary jumbled pattern matching we wish to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of size $i$ and has exactly $j$ 1-bits. The problem naturally generalizes to…

Data Structures and Algorithms · Computer Science 2014-07-01 Danny Hermelin , Gad M. Landau , Yuri Rabinovich , Oren Weimann

The palindromic fingerprint of a string $S[1\ldots n]$ is the set $PF(S) = \{(i,j)~|~ S[i\ldots j] \textit{ is a maximal }\\ \textit{palindrome substring of } S\}$. In this work, we consider the problem of string reconstruction from a…

Data Structures and Algorithms · Computer Science 2024-06-10 Amihood Amir , Michael Itzhaki

Given strings $P$ of length $m$ and $T$ of length $n$ over an alphabet of size $\sigma$, the string matching with $k$-mismatches problem is to find the positions of all the substrings in $T$ that are at Hamming distance at most $k$ from…

Data Structures and Algorithms · Computer Science 2013-08-01 Emanuele Giaquinta , Szymon Grabowski , Kimmo Fredriksson

We present a new algorithm for subsequence matching in grammar compressed strings. Given a grammar of size $n$ compressing a string of size $N$ and a pattern string of size $m$ over an alphabet of size $\sigma$, our algorithm uses…

Data Structures and Algorithms · Computer Science 2014-06-06 Philip Bille , Patrick Hagge Cording , Inge Li Gørtz