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By providing a framework of accounting for the shared ancestry inherent to all life, phylogenetics is becoming the statistical foundation of biology. The importance of model choice continues to grow as phylogenetic models continue to…

Populations and Evolution · Quantitative Biology 2019-02-05 Jamie R. Oaks , Kerry A. Cobb , Vladimir N. Minin , Adam D. Leaché

State-of-the-art machine learning models require access to significant amount of annotated data in order to achieve the desired level of performance. While unlabelled data can be largely available and even abundant, annotation process can…

Machine Learning · Computer Science 2020-10-15 Rahaf Aljundi , Nikolay Chumerin , Daniel Olmeda Reino

In this paper, we propose a general framework for combining evidence of varying quality to estimate underlying binary latent variables in the presence of restrictions imposed to respect the scientific context. The resulting algorithms…

Methodology · Statistics 2018-08-28 Zhenke Wu , Livia Casciola-Rosen , Antony Rosen , Scott L. Zeger

Data labeling is currently a time-consuming task that often requires expert knowledge. In research settings, the availability of correctly labeled data is crucial to ensure that model predictions are accurate and useful. We propose…

Machine Learning · Computer Science 2018-12-31 Marina Bendersky , Joy Wu , Tanveer Syeda-Mahmood

In multiclass classification, the goal is to learn how to predict a random label $Y$, valued in $\mathcal{Y}=\{1,\; \ldots,\; K \}$ with $K\geq 3$, based upon observing a r.v. $X$, taking its values in $\mathbb{R}^q$ with $q\geq 1$ say, by…

Machine Learning · Statistics 2020-02-24 Stephan Clémençon , Robin Vogel

We propose information criteria that measure the prediction risk of a predictive density based on the Bayesian marginal likelihood from a frequentist point of view. We derive criteria for selecting variables in linear regression models,…

Methodology · Statistics 2017-10-20 Yuki Kawakubo , Tatsuya Kubokawa , Muni S. Srivastava

This review outlines concepts of mathematical statistics, elements of probability theory, hypothesis tests and point estimation for use in the analysis of modern astronomical data. Least squares, maximum likelihood, and Bayesian approaches…

Instrumentation and Methods for Astrophysics · Physics 2012-05-10 Eric D. Feigelson , G. Jogesh Babu

Variable stars play a key role in understanding the Milky Way and the universe. The era of astronomical big data presents new challenges for quick identification of interesting and important variable stars. Accurately estimating the periods…

Instrumentation and Methods for Astrophysics · Physics 2022-12-21 Xiao-Hui Xu , Qing-Feng Zhu , Xu-Zhi Li , Bin Li , Hang Zheng , Jin-Sheng Qiu , Hai-Bin Zhao

We consider binary classification restricted to a class of continuous piecewise linear functions whose decision boundaries are (possibly nonconvex) starshaped polyhedral sets, supported on a fixed polyhedral simplicial fan. We investigate…

Machine Learning · Computer Science 2025-12-03 Marie-Charlotte Brandenburg , Katharina Jochemko

How do we compare between hypotheses that are entirely consistent with observations? The marginal likelihood (aka Bayesian evidence), which represents the probability of generating our observations from a prior, provides a distinctive…

Machine Learning · Computer Science 2023-05-03 Sanae Lotfi , Pavel Izmailov , Gregory Benton , Micah Goldblum , Andrew Gordon Wilson

RNA-Seq data characteristically exhibits large variances, which need to be appropriately accounted for in the model. We first explore the effects of this variability on the maximum likelihood estimator (MLE) of the overdispersion parameter…

Methodology · Statistics 2015-12-03 Luis Leon-Novelo , Claudio Fuentes , Sarah Emerson

Large databases are often organized by hand-labeled metadata, or criteria, which are expensive to collect. We can use unsupervised learning to model database variation, but these models are often high dimensional, complex to parameterize,…

Computer Vision and Pattern Recognition · Computer Science 2017-06-14 James Tompkin , Kwang In Kim , Hanspeter Pfister , Christian Theobalt

Current analysis of astronomical data are confronted with the daunting task of modeling the awkward features of astronomical data, among which heteroscedastic (point-dependent) errors, intrinsic scatter, non-ignorable data collection…

Instrumentation and Methods for Astrophysics · Physics 2011-12-19 S. Andreon

Interpretable classifiers have recently witnessed an increase in attention from the data mining community because they are inherently easier to understand and explain than their more complex counterparts. Examples of interpretable…

Machine Learning · Computer Science 2019-11-01 Hugo M. Proença , Matthijs van Leeuwen

The graphical lasso is a widely used algorithm for fitting undirected Gaussian graphical models. However, for inference on functionals of edge values in the learned graph, standard tools lack formal statistical guarantees, such as control…

Methodology · Statistics 2025-04-01 Sofia Guglielmini , Gerda Claeskens , Snigdha Panigrahi

There has been substantial progress in the inference of formal behavioural specifications from sample trajectories, for example, using Linear Temporal Logic (LTL). However, these techniques cannot handle specifications that correctly…

Logic in Computer Science · Computer Science 2025-05-20 Rajarshi Roy , Yash Pote , David Parker , Marta Kwiatkowska

Photometric metallicity formulae of fundamental-mode RR Lyr (RRab) stars are presented using globular-cluster data exclusively. The aim is to check whether this selection may help increasing the overall accuracy of the fits and eliminating…

Solar and Stellar Astrophysics · Physics 2023-08-21 Johanna Jurcsik , Gergely Hajdu

Multilabel classification is an important problem in a wide range of domains such as text categorization and music annotation. In this paper, we present a probabilistic model, Multilabel Logistic Regression with Hidden variables (MLRH),…

Machine Learning · Computer Science 2019-12-04 Jaemoon Lee , Hoda Shajari

Automated decision making systems are increasingly being used in real-world applications. In these systems for the most part, the decision rules are derived by minimizing the training error on the available historical data. Therefore, if…

Machine Learning · Computer Science 2018-07-31 AmirEmad Ghassami , Sajad Khodadadian , Negar Kiyavash

Semi-supervised learning by self-training heavily relies on pseudo-label selection (PLS). The selection often depends on the initial model fit on labeled data. Early overfitting might thus be propagated to the final model by selecting…

Machine Learning · Statistics 2023-06-27 Julian Rodemann , Jann Goschenhofer , Emilio Dorigatti , Thomas Nagler , Thomas Augustin
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