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Agent based models (ABMs) are a useful tool for modeling spatio-temporal population dynamics, where many details can be included in the model description. Their computational cost though is very high and for stochastic ABMs a lot of…

Dynamical Systems · Mathematics 2022-05-11 Stefanie Winkelmann , Johannes Zonker , Christof Schütte , Natasa Djurdjevac Conrad

Cell migration is frequently modelled using on-lattice agent-based models (ABMs) that employ the excluded volume interaction. However, cells are also capable of exhibiting more complex cell-cell interactions, such as adhesion, repulsion,…

Cell Behavior · Quantitative Biology 2023-07-26 Shahzeb Raja Noureen , Jennifer P. Owen , Richard L. Mort , Christian A. Yates

Agent-based modelling (ABM) is a facet of wider Multi-Agent Systems (MAS) research that explores the collective behaviour of individual `agents', and the implications that their behaviour and interactions have for wider systemic behaviour.…

Multiagent Systems · Computer Science 2022-10-14 Nick Malleson , Mark Birkin , Daniel Birks , Jiaqi Ge , Alison Heppenstall , Ed Manley , Josie McCulloch , Patricia Ternes

Corona Virus Disease 2019 (COVID-19), due to its extremely high infectivity, has been spreading rapidly around the world and bringing huge influence to socioeconomic development as well as people's daily life. Taking for example the virus…

Social and Information Networks · Computer Science 2021-10-19 Pei Lv , Quan Zhang , Boya Xu , Ran Feng , Chaochao Li , Junxiao Xue , Bing Zhou , Mingliang Xu

This paper develops an agent-based disease spread model on a contact network in an effort to guide efforts at surveillance testing in small to moderate facilities such as nursing homes and meat-packing plants. The model employs Monte Carlo…

Populations and Evolution · Quantitative Biology 2021-10-04 Yanyue Ding , Sudesh K. Agrawal , Jincheng Cao , Lauren Meyers , John J. Hasenbein

The potential power provided and possibilities presented by computation graphs has steered most of the available modeling techniques to re-implementing, utilization and including the complex nature of System Biology (SB). To model the…

Multiagent Systems · Computer Science 2019-09-05 Ghazal Tashakor , Remo Suppi

We build an agent-based model of incarceration based on the SIS model of infectious disease propagation. Our central hypothesis is that the observed racial disparities in incarceration rates between Black and White Americans can be…

Applications · Statistics 2013-12-06 Kristian Lum , Samarth Swarup , Stephen Eubank , James Hawdon

The COVID-19 pandemic prompted a surge in computational models to simulate disease dynamics and guide interventions. Agent-based models (ABMs) are well-suited to capture population and environmental heterogeneity, but their rapid deployment…

Cellular Agent-Based Models are commonly employed to describe a variety biological systems. Over the course of the past years, many modeling tools have emerged which solve particular research questions. In this short opinion piece, we argue…

Cell Behavior · Quantitative Biology 2025-11-18 Jonas Pleyer

Understanding infectious disease transmission in institutional settings requires models that capture how contacts arise from structured routines, roles, and spatial constraints. In aged care facilities, interactions are driven by care…

Populations and Evolution · Quantitative Biology 2026-03-19 Haley Stone , C. Raina MacIntyre , Mohana Kunasekaran , Chris Poulos , David Heslop

The understanding of human central nervous system depends on knowledge of its wiring. However, there are still gaps in our understanding of its wiring due to technical difficulties. While some information is coming out from human…

Neural and Evolutionary Computing · Computer Science 2012-09-17 Önder Gürcan , Oğuz Dikenelli , Kemal S. Türker

This study offers a new paradigm of individual-level modeling to address the grand challenge of incorporating human behavior in epidemic models. Using generative artificial intelligence in an agent-based epidemic model, each agent is…

Artificial Intelligence · Computer Science 2023-07-12 Ross Williams , Niyousha Hosseinichimeh , Aritra Majumdar , Navid Ghaffarzadegan

Agent-based modeling and simulation has evolved as a powerful tool for modeling complex systems, offering insights into emergent behaviors and interactions among diverse agents. Integrating large language models into agent-based modeling…

Artificial Intelligence · Computer Science 2023-12-20 Chen Gao , Xiaochong Lan , Nian Li , Yuan Yuan , Jingtao Ding , Zhilun Zhou , Fengli Xu , Yong Li

The risk of indoor airborne transmission among co-located individuals is generally non-uniform, which remains a critical challenge for public health modelling. Thus, we present CompARE, an integrated risk assessment framework for indoor…

This Overview, Design Concepts, and Details Protocol (ODD) provides a detailed description of an agent-based model (ABM) that was developed to simulate hospitalizations during the COVID-19 pandemic. Using the descriptions of submodels,…

Artificial Intelligence · Computer Science 2021-06-09 Kasey Jones , Emily Hadley , Sandy Preiss , Caroline Kery , Peter Baumgartner , Marie Stoner , Sarah Rhea

Agent-Based Models (ABM) are computational scenario-generators, which can be used to predict the possible future outcomes of the complex system they represent. To better understand the robustness of these predictions, it is necessary to…

General Economics · Economics 2022-08-08 Karl Naumann-Woleske , Max Sina Knicker , Michael Benzaquen , Jean-Philippe Bouchaud

Pandemics, notably the recent COVID-19 outbreak, have impacted both public health and the global economy. A profound understanding of disease progression and efficient response strategies is thus needed to prepare for potential future…

Multiagent Systems · Computer Science 2024-02-07 Gauri Gupta , Ritvik Kapila , Ayush Chopra , Ramesh Raskar

Agent-based modeling (ABM) is a well-established paradigm for simulating complex systems via interactions between constituent entities. Machine learning (ML) refers to approaches whereby statistical algorithms 'learn' from data on their…

Quantitative Methods · Quantitative Biology 2022-11-10 Nikita Sivakumar , Cameron Mura , Shayn M. Peirce

Agent-Based Models are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an…

Quantitative Methods · Quantitative Biology 2021-03-02 Cristina Curreli , Francesco Pappalardo , Giulia Russo , Marzio Pennisi , Dimitrios Kiagias , Miguel Juarez , Marco Viceconti , .

The design of agent-based models (ABMs) is often ad-hoc when it comes to defining their scope. In order for the inclusion of features such as network structure, location, or dynamic change to be justified, their role in a model should be…

Multiagent Systems · Computer Science 2017-12-29 Reiko Heckel , Alexander Kurz , Edmund Chattoe-Brown