Related papers: Bijections for Ranked Tree-Child Networks

The combined work of Bousquet-M\'elou, Claesson, Dukes, Jel\'inek, Kitaev, Kubitzke and Parviainen has resulted in non-trivial bijections among ascent sequences, (2+2)-free posets, upper-triangular integer matrices, and pattern-avoiding…

'Tree-based' phylogenetic networks proposed by Francis and Steel have attracted much attention of theoretical biologists in the last few years. At the heart of the definitions of tree-based phylogenetic networks is the notion of 'support…

Following a remark of Lawvere, we explicitly exhibit a particularly elementary bijection between the set T of finite binary trees and the set T^7 of seven-tuples of such trees. "Particularly elementary" means that the application of the…

We construct a bijection between $321$- and $213$-avoiding permutations that preserves the property of $t$-stack-sortability. Our bijection transforms natural statistics between these two classes of permutations and proves a refinement of…

A model for growing information networks is introduced where nodes receive new links through j-redirection, i.e. the probability for a node to receive a link depends on the number of paths of length j arriving at this node. In detail, when…

Phylogenetic networks are mathematical structures for modeling and visualization of reticulation processes in the study of evolution. Galled networks, reticulation visible networks, nearly-stable networks and stable-child networks are the…

Arboreal networks are a generalization of rooted trees, defined by keeping the tree-like structure, but dropping the requirement for a single root. Just as the class of cographs is precisely the class of undirected graphs that can be…

Banderier, Marchal, and Wallner considered Young tableaux with walls, which are similar to standard Young tableaux, except that local decreases are allowed at some walls. In this work, we prove a conjecture of Fuchs and Yu concerning the…

In \cite{BaDeFePi96} the concept of nondecreasing Dyck paths was introduced. We continue this research by looking at it from the point of view of words, rational languages, planted plane trees, and continued fractions. We construct a…

In mathematical phylogenetics, evolutionary relationships are often represented by trees and networks. The latter are typically used whenever the relationships cannot be adequately described by a tree, which happens when so-called…

We introduce some classes of increasing labeled and multilabeled trees, and we show that these trees provide combinatorial interpretations for certain Thron-type continued fractions with coefficients that are quasi-affine of period 2. Our…

We introduce a random graph model based on k-trees, which can be generated by applying a probabilistic preferential attachment rule, but which also has a simple combinatorial description. We carry out a precise distributional analysis of…

Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…

In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…

Rooted phylogenetic networks provide a more complete representation of the ancestral relationship between species than phylogenetic trees when reticulate evolutionary processes are at play. One way to reconstruct a phylogenetic network is…

The inference of phylogenetic networks, which model complex evolutionary processes including hybridization and gene flow, remains a central challenge in evolutionary biology. Until now, statistically consistent inference methods have been…

When hybridization or other forms of lateral gene transfer have occurred, evolutionary relationships of species are better represented by phylogenetic networks than by trees. While inference of such networks remains challenging, several…

Network representations of systems from various scientific and societal domains are neither completely random nor fully regular, but instead appear to contain recurring structural building blocks. These features tend to be shared by…

Two decades ago, Chauve, Dulucq and Guibert showed that the number of rooted trees on the vertex set $[n+1]$ in which exactly $k$ children of the root are lower-numbered than the root is $\binom{n}{k} \, n^{n-k}$. Here I give a simpler…

We present a bijection between 321- and 132-avoiding permutations that preserves the number of fixed points and the number of excedances. This gives a simple combinatorial proof of recent results of Robertson, Saracino and Zeilberger, and…