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Detecting vulnerabilities within compiled binaries is challenging due to lost high-level code structures and other factors such as architectural dependencies, compilers, and optimization options. To address these obstacles, this research…
Dementia is under-recognized in the community, under-diagnosed by healthcare professionals, and under-coded in claims data. Information on cognitive dysfunction, however, is often found in unstructured clinician notes within medical records…
Pre-trained Large Language Models (LLMs) often struggle on out-of-domain datasets like healthcare focused text. We explore specialized pre-training to adapt smaller LLMs to different healthcare datasets. Three methods are assessed:…
This paper develops a model that addresses sentence embedding, a hot topic in current natural language processing research, using recurrent neural networks with Long Short-Term Memory (LSTM) cells. Due to its ability to capture long term…
Term clustering is important in biomedical knowledge graph construction. Using similarities between terms embedding is helpful for term clustering. State-of-the-art term embeddings leverage pretrained language models to encode terms, and…
Effective communication between healthcare providers and patients is crucial to providing high-quality patient care. In this work, we investigate how Doctor-written and AI-generated texts in healthcare consultations can be classified using…
Previous text-based depression detection is commonly based on large user-generated data. Sparse scenarios like clinical conversations are less investigated. This work proposes a text-based multi-task BGRU network with pretrained word…
Conventional text classification models make a bag-of-words assumption reducing text into word occurrence counts per document. Recent algorithms such as word2vec are capable of learning semantic meaning and similarity between words in an…
Understanding the meaning of words is crucial for many tasks that involve human-machine interaction. This has been tackled by research in Word Sense Disambiguation (WSD) in the Natural Language Processing (NLP) field. Recently, WSD and many…
Due to massive adoption of social media, detection of users' depression through social media analytics bears significant importance, particularly for underrepresented languages, such as Bangla. This study introduces a well-grounded approach…
In this work, we introduce the Multiple Embedding Model for EHR (MEME), an approach that serializes multimodal EHR tabular data into text using pseudo-notes, mimicking clinical text generation. This conversion not only preserves better…
Most existing word embedding approaches do not distinguish the same words in different contexts, therefore ignoring their contextual meanings. As a result, the learned embeddings of these words are usually a mixture of multiple meanings. In…
De-identification is the process of removing 18 protected health information (PHI) from clinical notes in order for the text to be considered not individually identifiable. Recent advances in natural language processing (NLP) has allowed…
Discovery gene-disease links is important in biology and medicine areas, enabling disease identification and drug repurposing. Machine learning approaches accelerate this process by leveraging biological knowledge represented in ontologies…
Biomedical text embeddings have primarily been developed using research literature from PubMed, yet clinical cardiology practice relies heavily on procedural knowledge and specialized terminology found in comprehensive textbooks rather than…
Enriching existing medical terminology knowledge bases (KBs) is an important and never-ending work for clinical research because new terminology alias may be continually added and standard terminologies may be newly renamed. In this paper,…
Deep learning and multi-modal fusion have demonstrated transformative potential in medical diagnosis by integrating diverse data sources. However, accurate prognosis for ischemic stroke remains challenging due to limitations in existing…
Clinical word embeddings are extensively used in various Bio-NLP problems as a state-of-the-art feature vector representation. Although they are quite successful at the semantic representation of words, due to the dataset - which…
As hospitals move towards automating and integrating their computing systems, more fine-grained hospital operations data are becoming available. These data include hospital architectural drawings, logs of interactions between patients and…
Large Language Models (LLMs) have fundamentally transformed approaches to Natural Language Processing (NLP) tasks across diverse domains. In healthcare, accurate and cost-efficient text classification is crucial, whether for clinical notes…