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The decoder-only Transformer architecture with causal masking and relative position encoding (RPE) has become the de facto choice in language modeling. Despite its exceptional performance across various tasks, we have identified two…

Computation and Language · Computer Science 2024-02-08 Qingyu Yin , Xuzheng He , Xiang Zhuang , Yu Zhao , Jianhua Yao , Xiaoyu Shen , Qiang Zhang

A current goal in the graph neural network literature is to enable transformers to operate on graph-structured data, given their success on language and vision tasks. Since the transformer's original sinusoidal positional encodings (PEs)…

Machine Learning · Computer Science 2023-04-11 Patrick Soga , David Chiang

Rotary Positional Embedding (RoPE) is a common choice in transformer architectures for encoding relative positional information. Although earlier work has examined omitting RoPE in specific layers, the effect of varying the fraction of…

Machine Learning · Computer Science 2026-03-13 Mohammad Aflah Khan , Krishna P. Gummadi , Manish Gupta , Abhilasha Ravichander

Rotary positional embeddings (RoPE) are widely used in large language models to encode token positions through multiplicative rotations, yet their behavior at long context lengths remains poorly characterized. In this work, we reinterpret…

Machine Learning · Computer Science 2026-02-12 Feilong Liu

Characterizing the express power of the Transformer architecture is critical to understanding its capacity limits and scaling law. Recent works provide the circuit complexity bounds to Transformer-like architecture. On the other hand,…

Machine Learning · Computer Science 2024-12-03 Bo Chen , Xiaoyu Li , Yingyu Liang , Jiangxuan Long , Zhenmei Shi , Zhao Song

We propose Parabolic Position Encoding (PaPE), a parabola-based position encoding for vision modalities in attention-based architectures. Given a set of vision tokens-such as from videos, event camera streams, images, or point clouds-our…

Rotary Positional Embeddings (RoPE) have become the standard for Large Language Models (LLMs) due to their ability to encode relative positions through geometric rotation. However, we identify a significant limitation we term ''Spectral…

Computation and Language · Computer Science 2026-02-02 Kanishk Awadhiya

Multimodal large language models (MLLMs) have achieved strong performance on vision-language tasks, yet often suffer from inefficiencies due to redundant visual tokens. Existing token merging methods reduce sequence length but frequently…

Computer Vision and Pattern Recognition · Computer Science 2026-02-06 Mouxiao Huang , Borui Jiang , Dehua Zheng , Hailin Hu , Kai Han , Xinghao Chen

Transformers have emerged as a universal backbone across 3D perception, video generation, and world models for autonomous driving and embodied AI, where understanding camera geometry is essential for grounding visual observations in…

Computer Vision and Pattern Recognition · Computer Science 2026-03-27 Cheng Zhang , Boying Li , Meng Wei , Yan-Pei Cao , Camilo Cruz Gambardella , Dinh Phung , Jianfei Cai

Comorbidity, the co-occurrence of multiple medical conditions in a single patient, profoundly impacts disease management and outcomes. Understanding these complex interconnections is crucial, especially in contexts where comorbidities…

Machine Learning · Computer Science 2025-10-13 Xihan Qin , Li Liao

Transformer models are permutation equivariant. To supply the order and type information of the input tokens, position and segment embeddings are usually added to the input. Recent works proposed variations of positional encodings with…

Computation and Language · Computer Science 2021-11-04 Pu-Chin Chen , Henry Tsai , Srinadh Bhojanapalli , Hyung Won Chung , Yin-Wen Chang , Chun-Sung Ferng

Relative position embedding has become a standard mechanism for encoding positional information in Transformers. However, existing formulations are typically limited to a fixed geometric space, namely 1D sequences or regular 2D/3D grids,…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Yichen Xie , Depu Meng , Chensheng Peng , Yihan Hu , Quentin Herau , Masayoshi Tomizuka , Wei Zhan

We introduce Spline-based Transformers, a novel class of Transformer models that eliminate the need for positional encoding. Inspired by workflows using splines in computer animation, our Spline-based Transformers embed an input sequence of…

Machine Learning · Computer Science 2025-04-04 Prashanth Chandran , Agon Serifi , Markus Gross , Moritz Bächer

We study positional encodings for multi-view transformers that process tokens from a set of posed input images, and seek a mechanism that encodes patches uniquely, allows $SE(3)$-invariant attention with multi-frequency similarity, and can…

Computer Vision and Pattern Recognition · Computer Science 2026-03-23 Yu Wu , Minsik Jeon , Jen-Hao Rick Chang , Oncel Tuzel , Shubham Tulsiani

Unsupervised pre-training on vast amounts of graph data is critical in real-world applications wherein labeled data is limited, such as molecule properties prediction or materials science. Existing approaches pre-train models for specific…

Machine Learning · Computer Science 2024-10-01 Viet Anh Nguyen , Nhat Khang Ngo , Truong Son Hy

Several recent works use positional encodings to extend the receptive fields of graph neural network (GNN) layers equipped with attention mechanisms. These techniques, however, extend receptive fields to the complete graph, at substantial…

Machine Learning · Computer Science 2023-12-14 Rickard Brüel-Gabrielsson , Mikhail Yurochkin , Justin Solomon

Positional encodings are essential to transformer-based generative models, yet their behavior in multimodal and attention-sharing settings is not fully understood. In this work, we present a principled analysis of Rotary Positional…

Graphics · Computer Science 2026-02-06 Aryan Mikaeili , Or Patashnik , Andrea Tagliasacchi , Daniel Cohen-Or , Ali Mahdavi-Amiri

Implicit neural representations (INRs) are increasingly being used as tools to map coordinates to signals, encompassing applications from neural fields to texture compression, shape representations, and beyond. Most INR methods are based on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 Guillaume Perez , Janarbek Matai , Takahiro Harada

Neural encoder-decoder models have been successful in natural language generation tasks. However, real applications of abstractive summarization must consider additional constraint that a generated summary should not exceed a desired…

Computation and Language · Computer Science 2019-04-17 Sho Takase , Naoaki Okazaki

Positional and structural encodings (PSE) enable better identifiability of nodes within a graph, rendering them essential tools for empowering modern GNNs, and in particular graph Transformers. However, designing PSEs that work optimally…

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