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From neuroscience and genomics to systems biology and ecology, researchers rely on clustering similarity data to uncover modular structure. Yet widely used clustering methods, such as hierarchical clustering, k-means, and WGCNA, lack…

Machine Learning · Statistics 2025-10-20 Magnus Neuman , Jelena Smiljanić , Martin Rosvall

This work is focused on the morphological classification of galaxies following the Hubble sequence in which the different classes are arranged in a hierarchy. The proposed method, BCNN, is composed of two main modules. First, a…

Instrumentation and Methods for Astrophysics · Physics 2024-09-04 Jonathan Serrano-Pérez , Raquel Díaz Hernández , L. Enrique Sucar

We introduce a new Bayesian model for hierarchical clustering based on a prior over trees called Kingman's coalescent. We develop novel greedy and sequential Monte Carlo inferences which operate in a bottom-up agglomerative fashion. We show…

Machine Learning · Statistics 2009-07-07 Yee Whye Teh , Hal Daumé , Daniel Roy

Density estimation represents one of the most successful applications of Bayesian nonparametrics. In particular, Dirichlet process mixtures of normals are the gold standard for density estimation and their asymptotic properties have been…

Statistics Theory · Mathematics 2015-07-02 Antonio Canale , Pierpaolo De Blasi

Agglomerative hierarchical clustering (AHC) is one of the popular clustering approaches. Existing AHC methods, which are based on a distance measure, have one key issue: it has difficulty in identifying adjacent clusters with varied…

Machine Learning · Computer Science 2024-01-30 Xin Han , Ye Zhu , Kai Ming Ting , Gang Li

Approximate Bayesian computation (ABC) has gained popularity over the past few years for the analysis of complex models arising in population genetic, epidemiology and system biology. Sequential Monte Carlo (SMC) approaches have become work…

Computation · Statistics 2012-10-16 Sarah Filippi , Chris Barnes , Julien Cornebise , Michael P. H. Stumpf

This paper proposes a new nonparametric Bayesian bootstrap for a mixture model, by developing the traditional Bayesian bootstrap. We first reinterpret the Bayesian bootstrap, which uses the P\'olya-urn scheme, as a gradient ascent algorithm…

Methodology · Statistics 2025-01-28 Fuheng Cui , Stephen G. Walker

Deep clustering is a deep neural network-based speech separation algorithm that first trains the mixed component of signals with high-dimensional embeddings, and then uses a clustering algorithm to separate each mixture of sources. In this…

Audio and Speech Processing · Electrical Eng. & Systems 2019-01-16 Soyeon Choe , Soo-Whan Chung , Youna Ji , Hong-Goo Kang

In this paper, we address technical difficulties that arise when applying Markov chain Monte Carlo (MCMC) to hierarchical models designed to perform clustering in the space of latent parameters of subject-wise generative models.…

Quantitative Methods · Quantitative Biology 2020-12-15 Yu Yao , Klaas E. Stephan

Many modern experiments, such as microarray gene expression and genome-wide association studies, present the problem of estimating a large number of parallel effects. Bayesian inference is a popular approach for analyzing such data by…

Methodology · Statistics 2018-10-26 J G Liao , Arthur Berg , Timothy L McMurry

Semi-supervised clustering is the task of clustering data points into clusters where only a fraction of the points are labelled. The true number of clusters in the data is often unknown and most models require this parameter as an input.…

Machine Learning · Computer Science 2013-09-27 Amar Shah , Zoubin Ghahramani

Datasets in engineering applications are often limited and contaminated, mainly due to unavoidable measurement noise and signal distortion. Thus, using conventional data-driven approaches to build a reliable discriminative model, and…

Machine Learning · Statistics 2020-04-14 Xihaier Luo , Ahsan Kareem

Kernel segmentation aims at partitioning a data sequence into several non-overlapping segments that may have nonlinear and complex structures. In general, it is formulated as a discrete optimization problem with combinatorial constraints. A…

Machine Learning · Computer Science 2022-06-23 Tung Doan , Atsuhiro Takasu

Deep Gaussian process models typically employ discrete hierarchies, but recent advancements in differential Gaussian processes (DiffGPs) have extended these models to infinite depths. However, existing DiffGP approaches often overlook the…

Machine Learning · Computer Science 2025-12-16 Jian Xu , Zhiqi Lin , Min Chen , Junmei Yang , Delu Zeng , John Paisley

The perennial problem of "how many clusters?" remains an issue of substantial interest in data mining and machine learning communities, and becomes particularly salient in large data sets such as populational genomic data where the number…

Machine Learning · Statistics 2009-08-20 Kyung-Ah Sohn , Eric P. Xing

Network meta-analysis (NMA) synthesizes evidence for multiple treatments, but decisions on node formation can have important statistical implications including bias or inflated uncertainty. Existing data-driven methods often lack…

Methodology · Statistics 2025-06-30 Timothy Disher , Chris Cameron , Brian Hutton

Bayesian models offer great flexibility for clustering applications---Bayesian nonparametrics can be used for modeling infinite mixtures, and hierarchical Bayesian models can be utilized for sharing clusters across multiple data sets. For…

Machine Learning · Computer Science 2012-06-15 Brian Kulis , Michael I. Jordan

This article presents a novel pretopology-based algorithm designed to address the challenges of clustering mixed data without the need for dimensionality reduction. Leveraging Disjunctive Normal Form, our approach formulates customizable…

Machine Learning · Computer Science 2025-12-04 Loup-Noe Levy , Guillaume Guerard , Sonia Djebali , Soufian Ben Amor

In various verification systems, Restricted Boltzmann Machines (RBMs) have demonstrated their efficacy in both front-end and back-end processes. In this work, we propose the use of RBMs to the image clustering tasks. RBMs are trained to…

Computer Vision and Pattern Recognition · Computer Science 2024-01-17 Abraham Woubie , Enoch Solomon , Eyael Solomon Emiru

Standard discretization techniques for boundary integral equations, e.g., the Galerkin boundary element method, lead to large densely populated matrices that require fast and efficient compression techniques like the fast multipole method…

Numerical Analysis · Mathematics 2022-03-14 Steffen Börm