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The Transformer architecture has gained growing attention in graph representation learning recently, as it naturally overcomes several limitations of graph neural networks (GNNs) by avoiding their strict structural inductive biases and…

Machine Learning · Statistics 2022-06-14 Dexiong Chen , Leslie O'Bray , Karsten Borgwardt

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved state-of-the-art performance in tasks such as node classification and link prediction. However, most existing GNNs are designed to learn…

Machine Learning · Computer Science 2020-02-06 Seongjun Yun , Minbyul Jeong , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

Transformer-based pre-trained models have gained much advance in recent years, becoming one of the most important backbones in natural language processing. Recent work shows that the attention mechanism inside Transformer may not be…

Computation and Language · Computer Science 2022-10-27 Yile Wang , Linyi Yang , Zhiyang Teng , Ming Zhou , Yue Zhang

Graphs are a commonly used construct for representing relationships between elements in complex high dimensional datasets. Many real-world phenomenon are dynamic in nature, meaning that any graph used to represent them is inherently…

Social and Information Networks · Computer Science 2018-11-21 Stephen Bonner , John Brennan , Ibad Kureshi , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

Objects and their relationships are critical contents for image understanding. A scene graph provides a structured description that captures these properties of an image. However, reasoning about the relationships between objects is very…

Computer Vision and Pattern Recognition · Computer Science 2018-11-16 Sanghyun Woo , Dahun Kim , Donghyeon Cho , In So Kweon

Representation learning provides new and powerful graph analytical approaches and tools for the highly valued data science challenge of mining knowledge graphs. Since previous graph analytical methods have mostly focused on homogeneous…

Information Retrieval · Computer Science 2019-05-29 Zheng Gao , Gang Fu , Chunping Ouyang , Satoshi Tsutsui , Xiaozhong Liu , Jeremy Yang , Christopher Gessner , Brian Foote , David Wild , Qi Yu , Ying Ding

Scene graphs offer a structured, hierarchical representation of images, with nodes and edges symbolizing objects and the relationships among them. It can serve as a natural interface for image editing, dramatically improving precision and…

Computer Vision and Pattern Recognition · Computer Science 2024-10-16 Zhiyuan Zhang , DongDong Chen , Jing Liao

Learning vector representations for programs is a critical step in applying deep learning techniques for program understanding tasks. Various neural network models are proposed to learn from tree-structured program representations, e.g.,…

Software Engineering · Computer Science 2023-01-10 Wenhan Wang , Kechi Zhang , Ge Li , Shangqing Liu , Anran Li , Zhi Jin , Yang Liu

Generating semantic layout from scene graph is a crucial intermediate task connecting text to image. We present a conceptually simple, flexible and general framework using sequence to sequence (seq-to-seq) learning for this task. The…

Computer Vision and Pattern Recognition · Computer Science 2019-08-20 Boren Li , Boyu Zhuang , Mingyang Li , Jian Gu

Long document classification presents challenges in capturing both local and global dependencies due to their extensive content and complex structure. Existing methods often struggle with token limits and fail to adequately model…

Computation and Language · Computer Science 2024-10-07 Sudipta Singha Roy , Xindi Wang , Robert E. Mercer , Frank Rudzicz

Self-supervised representation learning on text-attributed graphs, which aims to create expressive and generalizable representations for various downstream tasks, has received increasing research attention lately. However, existing methods…

Computation and Language · Computer Science 2023-10-24 Yichuan Li , Kaize Ding , Kyumin Lee

Recently, the emerging graph Transformers have made significant advancements for node classification on graphs. In most graph Transformers, a crucial step involves transforming the input graph into token sequences as the model input,…

Machine Learning · Computer Science 2024-06-28 Jinsong Chen , Siyu Jiang , Kun He

Recent advances in Neural Machine Translation (NMT) show that adding syntactic information to NMT systems can improve the quality of their translations. Most existing work utilizes some specific types of linguistically-inspired tree…

Computation and Language · Computer Science 2018-08-29 Xinyi Wang , Hieu Pham , Pengcheng Yin , Graham Neubig

Graph Neural Networks (GNNs) have gained great popularity in tackling various analytical tasks on graph-structured data (i.e., networks). Typical GNNs and their variants follow a message-passing manner that obtains network representations…

Social and Information Networks · Computer Science 2022-06-16 Zhizhi Yu , Di Jin , Jianguo Wei , Ziyang Liu , Yue Shang , Yun Xiao , Jiawei Han , Lingfei Wu

In domains such as healthcare, finance, and e-commerce, the temporal dynamics of relational data emerge from complex interactions-such as those between patients and providers, or users and products across diverse categories. To be broadly…

Machine Learning · Computer Science 2025-11-07 Divyansha Lachi , Mahmoud Mohammadi , Joe Meyer , Vinam Arora , Tom Palczewski , Eva L. Dyer

Recent efforts leverage Large Language Models (LLMs) for modeling text-attributed graph structures in node classification tasks. These approaches describe graph structures for LLMs to understand or aggregate LLM-generated textual attribute…

Computation and Language · Computer Science 2025-05-27 Huachi Zhou , Jiahe Du , Chuang Zhou , Chang Yang , Yilin Xiao , Yuxuan Xie , Xiao Huang

Recent progress on parse tree encoder for sentence representation learning is notable. However, these works mainly encode tree structures recursively, which is not conducive to parallelization. On the other hand, these works rarely take…

Computation and Language · Computer Science 2022-05-10 Junhua Ma , Jiajun Li , Yuxuan Liu , Shangbo Zhou , Xue Li

Researchers have recently started investigating deep neural networks for dialogue applications. In particular, generative sequence-to-sequence (Seq2Seq) models have shown promising results for unstructured tasks, such as word-level dialogue…

Computation and Language · Computer Science 2016-11-21 Iulian Vlad Serban , Ryan Lowe , Laurent Charlin , Joelle Pineau

Relational structures such as schema linking and schema encoding have been validated as a key component to qualitatively translating natural language into SQL queries. However, introducing these structural relations comes with prices: they…

Computation and Language · Computer Science 2022-10-11 Jiexing Qi , Jingyao Tang , Ziwei He , Xiangpeng Wan , Yu Cheng , Chenghu Zhou , Xinbing Wang , Quanshi Zhang , Zhouhan Lin