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The goal of the paper is to automatize the selection of mechanisms which are able to describe a set of measurements. In order to do so first we construct a set of possible mechanism fulfilling chemically reasonable requirements with a given…

Numerical Analysis · Mathematics 2019-04-03 Tibor Nagy , János Tóth , Tamás Ladics

Designing plausible network models typically requires scholars to form a priori intuitions on the key drivers of network formation. Oftentimes, these intuitions are supported by the statistical estimation of a selection of network evolution…

Social and Information Networks · Computer Science 2019-07-01 Telmo Menezes , Camille Roth

Deep generative models have been shown powerful in generating novel molecules with desired chemical properties via their representations such as strings, trees or graphs. However, these models are limited in recommending synthetic routes…

Artificial Intelligence · Computer Science 2022-08-02 Dai Hai Nguyen , Koji Tsuda

In the present paper we propose to describe gene networks in biological systems using probabilistic algorithms. We describe gene duplication in the process of biological evolution using introduction of the replica procedure for…

Molecular Networks · Quantitative Biology 2012-08-01 S. V. Kozyrev , A. Yu. Khrennikov

In this paper, we propose a new and unified approach for nonparametric regression and conditional distribution learning. Our approach simultaneously estimates a regression function and a conditional generator using a generative learning…

Machine Learning · Statistics 2023-06-28 Shanshan Song , Tong Wang , Guohao Shen , Yuanyuan Lin , Jian Huang

Autoregressive language models achieve remarkable performance, yet a unified theory explaining their internal mechanisms, how training shapes representations, and why these representations support complex behavior remains incomplete. We…

Machine Learning · Computer Science 2026-05-14 Yifan Zhang

Native type systems are those in which type constructors are derived from term constructors, as well as the constructors of predicate logic and intuitionistic type theory. We present a method to construct native type systems for a broad…

Logic in Computer Science · Computer Science 2022-11-04 Christian Williams , Michael Stay

A generative recurrent neural network is quickly trained in an unsupervised manner to model popular reinforcement learning environments through compressed spatio-temporal representations. The world model's extracted features are fed into…

Machine Learning · Computer Science 2018-09-07 David Ha , Jürgen Schmidhuber

Representations are internal models of the environment that can provide guidance to a behaving agent, even in the absence of sensory information. It is not clear how representations are developed and whether or not they are necessary or…

Neurons and Cognition · Quantitative Biology 2013-08-07 Lars Marstaller , Arend Hintze , Christoph Adami

The continuity of life and its evolution, we proposed, emerge from an interactive group process manifested in networks of interaction. We term this process \textit{survival-of-the-fitted}. Here, we reason that survival of the fitted results…

Neural and Evolutionary Computing · Computer Science 2025-06-17 Irun R. Cohen , Assaf Marron

Motivated by a desire to improve on the current state of the art in genetic programming, and aided by recent progress in understanding the computational aspects of evolutionary systems, we describe a process that creates a set of generic…

Neural and Evolutionary Computing · Computer Science 2019-02-19 David Landaeta

Generative models are typically trained on grid-like data such as images. As a result, the size of these models usually scales directly with the underlying grid resolution. In this paper, we abandon discretized grids and instead…

Machine Learning · Computer Science 2022-02-18 Emilien Dupont , Yee Whye Teh , Arnaud Doucet

Large Language Models (LLMs) have transformed text generation through inherently probabilistic context-aware mechanisms, mimicking human natural language. In this paper, we systematically investigate the performance of various LLMs when…

Computation and Language · Computer Science 2025-02-28 Javier Coronado-Blázquez

When automatically generating programming exercise tasks one often also needs to automatically generate programs. At the very least when providing sample solutions is part of automated feedback. But programs can also be used as part of the…

Software Engineering · Computer Science 2025-08-06 Oliver Westphal

This article considers the increasing use of algorithmic decision-support systems and synthetic media in the newsroom, and explores how generative models can help reporters and editors across a range of tasks from the conception of a news…

Computers and Society · Computer Science 2024-03-01 Sachita Nishal , Nicholas Diakopoulos

This paper describes a methodology for analyzing the evolutionary dynamics of genetic programming (GP) using genealogical information, diversity measures and information about the fitness variation from parent to offspring. We introduce a…

Machine Learning · Computer Science 2021-08-25 Bogdan Burlacu , Michael Affenzeller , Michael Kommenda

We study the evolution of artificial learning systems by means of selection. Genetic programming is used to generate a sequence of populations of algorithms which can be used by neural networks for supervised learning of a rule that…

Biological Physics · Physics 2009-11-07 Juan Pablo Neirotti , Nestor Caticha

Gene-sharing networks provide a powerful framework to study the evolution of viruses and mobile genetic elements. These bipartite networks, which link genes to the genomes that contain them, exhibit characteristic degree distributions: a…

Populations and Evolution · Quantitative Biology 2026-04-16 Jaime Iranzo , Pedro Jódar , Eugene V. Koonin , Susanna Manrubia , José A. Cuesta

Neural language models can be successfully trained on source code, leading to applications such as code completion. However, their versatile autoregressive self-supervision objective overlooks important global sequence-level features that…

Machine Learning · Computer Science 2021-06-10 Tomasz Korbak , Hady Elsahar , Marc Dymetman , Germán Kruszewski

Natural Language Generation systems typically have two parts - strategic ('what to say') and tactical ('how to say'). We present our experiments in building an unsupervised corpus-driven template based tactical NLG system. We consider…

Computation and Language · Computer Science 2016-05-25 Nikhilesh Bhatnagar , Radhika Mamidi