English
Related papers

Related papers: Accelerating SARS-CoV-2 low frequency variant call…

200 papers

Multi-sequence MRIs can be necessary for reliable diagnosis in clinical practice due to the complimentary information within sequences. However, redundant information exists across sequences, which interferes with mining efficient…

Computer Vision and Pattern Recognition · Computer Science 2023-02-02 Luyi Han , Tao Tan , Tianyu Zhang , Yunzhi Huang , Xin Wang , Yuan Gao , Jonas Teuwen , Ritse Mann

Simple feedback loops, inspired from extremum-seeking, are proposed to lock a probe-frequency to the transition frequency of a single quantum system following quantum Monte-Carlo trajectories. Two specific quantum systems are addressed, a…

Mathematical Physics · Physics 2009-09-09 Mazyar Mirrahimi , Pierre Rouchon

In winter of 2020, SARS-CoV-2 emerged as a global threat, impacting not only health but also financial and political stability. To address the societal need for monitoring the spread of SARS-CoV-2, many existing diagnostic technologies were…

With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (and unknown) variants of SARS-CoV-2. Identifying particular…

Quantitative Methods · Quantitative Biology 2021-10-13 Sarwan Ali , Bikram Sahoo , Naimat Ullah , Alexander Zelikovskiy , Murray Patterson , Imdadullah Khan

High-throughput and quantitative experimental technologies are experiencing rapid advances in the biological sciences. One important recent technique is multiplexed fluorescence in situ hybridization (mFISH), which enables the…

Information Theory · Computer Science 2021-02-04 Luca D'Alessio , Litian Liu , Ken Duffy , Yonina C. Eldar , Muriel Medard , Mehrtash Babadi

Machine learning models experience deteriorated performance when trained in the presence of noisy labels. This is particularly problematic for medical tasks, such as survival prediction, which typically face high label noise complexity with…

Machine Learning · Computer Science 2024-07-22 Jianan Chen , Vishwesh Ramanathan , Tony Xu , Anne L. Martel

Compute-and-Forward (C&F) has been proposed as an efficient strategy to reduce the backhaul load for the distributed antenna systems. Finding the optimal coefficients in C&F has commonly been treated as a shortest vector problem (SVP),…

Information Theory · Computer Science 2017-04-18 Qinhui Huang , Alister Burr

Motivation: Detecting local correlations in expression between neighbor genes along the genome has proved to be an effective strategy to identify possible causes of transcriptional deregulation in cancer. It has been successfully used to…

The use of deep learning models in computational biology has increased massively in recent years, and it is expected to continue with the current advances in the fields such as Natural Language Processing. These models, although able to…

Cross-domain few-shot learning (CD-FSL) aims to recognize novel classes with only a few labeled examples under significant domain shifts. While recent approaches leverage a limited amount of labeled target-domain data to improve…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Siqi Hui , Sanping Zhou , Ye deng , Wenli Huang , Jinjun Wang

Spectrum sensing is essential in cognitive radio to enable dynamic spectrum access. In many scenarios, primary user signal must be detected reliably in low signal-to-noise ratio (SNR) regime under required sensing time. We propose to use…

Information Theory · Computer Science 2009-06-04 Kun Zheng , Husheng Li , Seddik M. Djouadi , Jun Wang

Recognizing degraded faces from low resolution and blurred images are common yet challenging task. Local Frequency Descriptor (LFD) has been proved to be effective for this task yet it is extracted from a spatial neighborhood of a pixel of…

Computer Vision and Pattern Recognition · Computer Science 2012-10-04 Guangling Sun , Guoqing Li , Xinpeng Zhang

At very low frequencies, the new pan-European radio telescope LOFAR is opening the last unexplored window of the electromagnetic spectrum for astrophysical studies. The revolutionary APERTIF phased arrays that are about to be installed on…

Reconstruction of undersampled periodic signals of unknown period is an important signal processing operation. It is especially difficult operation when the sequences of samples are short and no information on the inter-sequence time…

Signal Processing · Electrical Eng. & Systems 2021-05-18 Marek W. Rupniewski

In Kato and Uemura (2012), we introduced the Least Absolute Shrinkage and Selection Operator (Lasso) method, a kind of sparse modeling, to study frequency structures of variable stars. A very high frequency resolution was achieved compared…

Solar and Stellar Astrophysics · Physics 2022-01-20 Taichi Kato

The goal of this paper is to generate realistic audio with a lightweight and fast diffusion-based vocoder, named FreGrad. Our framework consists of the following three key components: (1) We employ discrete wavelet transform that decomposes…

Audio and Speech Processing · Electrical Eng. & Systems 2024-01-19 Tan Dat Nguyen , Ji-Hoon Kim , Youngjoon Jang , Jaehun Kim , Joon Son Chung

Radio frequency fingerprint identification (RFFI) can classify wireless devices by analyzing the signal distortions caused by the intrinsic hardware impairments. State-of-the-art neural networks have been adopted for RFFI. However, many…

Signal Processing · Electrical Eng. & Systems 2022-07-08 Guanxiong Shen , Junqing Zhang , Alan Marshall , Mikko Valkama , Joseph Cavallaro

Motivation: The mapping of RNA-seq reads to their transcripts of origin is a fundamental task in transcript expression estimation and differential expression scoring. Where ambiguities in mapping exist due to transcripts sharing sequence,…

Genomics · Quantitative Biology 2015-01-28 James Hensman , Peter Glaus , Antti Honkela , Magnus Rattray

Miniature DNA sequencing hardware has begun to succeed in mobile contexts, driving demand for efficient machine learning at the edge. This domain leverages deep learning techniques familiar from speech and time-series analysis for both…

Hardware Architecture · Computer Science 2025-10-13 Sebastian Magierowski , Zhongpan Wu , Abel Beyene , Karim Hammad

In the past several months, COVID-19 has spread over the globe and caused severe damage to the people and the society. In the context of this severe situation, an effective drug discovery method to generate potential drugs is extremely…

Machine Learning · Computer Science 2021-04-26 Tianyue Cheng , Tianchi Fan , Landi Wang