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The Mapper algorithm is an essential tool for visualizing complex, high dimensional data in topology data analysis (TDA) and has been widely used in biomedical research. It outputs a combinatorial graph whose structure implies the shape of…

Machine Learning · Computer Science 2025-04-24 Yuyang Tao , Shufei Ge

Characterizing motif (i.e., locally connected subgraph patterns) statistics is important for understanding complex networks such as online social networks and communication networks. Previous work made the strong assumption that the graph…

Social and Information Networks · Computer Science 2015-02-25 Pinghui Wang , John C. S. Lui , Don Towsley

Merge trees are a type of topological descriptors that record the connectivity among the sublevel sets of scalar fields. They are among the most widely used topological tools in visualization. In this paper, we are interested in sketching a…

Computational Geometry · Computer Science 2021-06-01 Mingzhe Li , Sourabh Palande , Lin Yan , Bei Wang

With the popularization of Topological Data Analysis, the Reeb graph has found new applications as a summarization technique in the analysis and visualization of large and complex data, whose usefulness extends beyond just the graph itself.…

Computational Geometry · Computer Science 2020-01-14 Junyi Tu , Mustafa Hajij , Paul Rosen

In this paper we introduce a novel family of attributed graphs for the purpose of shape discrimination. Our graphs typically arise from variations on the Mapper graph construction, which is an approximation of the Reeb graph for point cloud…

Algebraic Topology · Mathematics 2023-07-03 Justin Curry , Washington Mio , Tom Needham , Osman Berat Okutan , Florian Russold

In this study we present a two-step map/reduce framework to stitch satellite mosaic images. The proposed system enable recognition and extraction of objects whose parts falling in separate satellite mosaic images. However this is a time and…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-08-28 Hayrunnisa Sari , Suleyman Eken , Ahmet Sayar

Objective: The Mapper algorithm is a qualitative method in topological data analysis that constructs graphs from point clouds by combining dimensionality reduction and clustering techniques. The aim of this study is to apply Mapper,…

Quantitative Methods · Quantitative Biology 2026-04-22 Aina Ferrà Marcús , Carles Casacuberta , Josep Vives , Joan Guich , Gerard Amorós-Figueras , Jose M. Guerra

Learning graphs from sets of nodal observations represents a prominent problem formally known as graph topology inference. However, current approaches are limited by typically focusing on inferring single networks, and they assume that…

Social and Information Networks · Computer Science 2021-11-17 Samuel Rey , Andrei Buciulea , Madeline Navarro , Santiago Segarra , Antonio G. Marques

We introduce Tinker, a tool for designing and evaluating proof strategies based on proof-strategy graphs, a formalism previously introduced by the authors. We represent proof strategies as open-graphs, which are directed graphs with…

Logic in Computer Science · Computer Science 2014-10-31 Gudmund Grov , Aleks Kissinger , Yuhui Lin

In this paper we outline a topological framework for constructing 2-periodic knitted stitches and an algebra for joining stitches together to form more complicated textiles. Our topological framework can be constructed from certain…

Soft Condensed Matter · Physics 2020-02-06 Shashank G Markande , Elisabetta A Matsumoto

We study biplane graphs drawn on a finite planar point set $S$ in general position. This is the family of geometric graphs whose vertex set is $S$ and can be decomposed into two plane graphs. We show that two maximal biplane graphs---in the…

Computational Geometry · Computer Science 2017-08-10 Alfredo García , Ferran Hurtado , Matias Korman , Inês Matos , Maria Saumell , Rodrigo I. Silveira , Javier Tejel , Csaba D. Tóth

In this paper we propose a new method to enhance a mapping $\mu(\cdot)$ of a parallel application's computational tasks to the processing elements (PEs) of a parallel computer. The idea behind our method \mswap is to enhance such a mapping…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-20 Roland Glantz , Maria Predari , Henning Meyerhenke

We study the topological construction called Mapper in the context of simply connected domains, in particular on images. The Mapper construction can be considered as a generalization for contour, split, and joint trees on simply connected…

Computer Vision and Pattern Recognition · Computer Science 2017-12-11 Alejandro Robles , Mustafa Hajij , Paul Rosen

Large-scale vector mapping is important for transportation, city planning, and survey and census. We propose GraphMapper, a unified framework for end-to-end vector map extraction from satellite images. Our key idea is a novel unified…

Computer Vision and Pattern Recognition · Computer Science 2022-11-15 Lei Wang , Min Dai , Jianan He , Jingwei Huang , Mingwei Sun

We develop a novel data-driven nonlinear mixup mechanism for graph data augmentation and present different mixup functions for sample pairs and their labels. Mixup is a data augmentation method to create new training data by linearly…

Machine Learning · Computer Science 2022-10-31 Madeline Navarro , Santiago Segarra

A graph is a mathematical object consisting of a set of vertices and a set of edges connecting vertices. Graphs can be drawn on paper in various ways, but until recently all published methods of drawing graphs have had undesirable…

Human-Computer Interaction · Computer Science 2014-05-22 Bob Blakley , G R Blakley , Sean M Blakley

Deep learning has been shown to be very capable at performing many real-world tasks. However, this performance is often dependent on the presence of large and varied datasets. In some settings, like in the medical domain, data is often…

Machine Learning · Computer Science 2025-12-22 Arthur Guijt , Dirk Thierens , Ellen Kerkhof , Jan Wiersma , Tanja Alderliesten , Peter A. N. Bosman

Persistence diagrams have been widely recognized as a compact descriptor for characterizing multiscale topological features in data. When many datasets are available, statistical features embedded in those persistence diagrams can be…

Algebraic Topology · Mathematics 2017-07-07 Ippei Obayashi , Yasuaki Hiraoka

Given partial measurements of a time-varying graph signal, we propose an algorithm to simultaneously estimate both the underlying graph topology and the missing measurements. The proposed algorithm operates by training an interpretable…

Signal Processing · Electrical Eng. & Systems 2024-07-17 Subbareddy Batreddy , Pushkal Mishra , Yaswanth Kakarla , Aditya Siripuram

Two-dimensional mappings obtained by coupling two piecewise increasing expanding maps are considered. Their dynamics is described when the coupling parameter increases in the expanding domain. By introducing a coding and by analysing an…

Chaotic Dynamics · Physics 2007-05-23 Bastien Fernandez , Pierre Guiraud