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Variations of physical and chemical characteristics of biomass lead to an uneven flow of biomass in a biorefinery, which reduces equipment utilization and increases operational costs. Uncertainty of biomass supply and high processing costs…

Optimization and Control · Mathematics 2021-01-11 Berkay Gulcan , Sandra D. Eksioglu , Yongjia Song , Mohammad Roni , Qiushi Chen

Variations of physical and chemical characteristics of biomass reduce equipment utilization and increase operational costs of biomass processing. Biomass processing facilities use sensors to monitor the changes in biomass characteristics.…

Optimization and Control · Mathematics 2021-07-20 Berkay Gulcan , Yongjia Song , Sandra D. Eksioglu

The variations in feedstock characteristics such as moisture and particle size distribution lead to an inconsistent flow of feedstock from the biomass pre-processing system to the reactor in-feed system. These inconsistencies result in low…

Optimization and Control · Mathematics 2021-03-10 Fikri Kucuksayacigil , Mohammad Roni , Sandra D. Eksioglu , Qiushi Chen

Blending biomass materials of different physical or chemical properties provides an opportunity to adjust the quality of the feedstock to meet the specifications of the conversion platform. We propose a model which identifies the right mix…

Optimization and Control · Mathematics 2020-06-15 Sandra D. Eksioglu , Berkay Gulcan , Mohammad Roni , Scott Mason

Co-pyrolysis of biomass feedstocks with polymeric wastes is a promising strategy for improving the quantity and quality parameters of the resulting liquid fuel. Numerous experimental measurements are typically conducted to find the optimal…

In biopharmaceutical manufacturing, fermentation processes play a critical role in productivity and profit. A fermentation process uses living cells with complex biological mechanisms, leading to high variability in the process outputs,…

Machine Learning · Statistics 2024-07-09 Bo Wang , Wei Xie , Tugce Martagan , Alp Akcay , Bram van Ravenstein

Due to the new carbon neutral policies, many district heating operators start operating their combined heat and power (CHP) plants using different types of biomass instead of fossil fuel. The contracts with the biomass suppliers are…

Optimization and Control · Mathematics 2020-06-25 Ignacio Blanco , Daniela Guericke , Juan M. Morales , Henrik Madsen

The production process involved in the creation of biofuels consists of a number of operations and steps that require a meticulous understanding of the parameters and metrics. The production techniques again differ depending on the…

Other Quantitative Biology · Quantitative Biology 2023-08-03 Amardeep Singh

Stochasticity is a key characteristic of intracellular processes such as gene regulation and chemical signalling. Therefore, characterising stochastic effects in biochemical systems is essential to understand the complex dynamics of living…

Molecular Networks · Quantitative Biology 2019-03-04 David J. Warne , Ruth E. Baker , Matthew J. Simpson

The processing of agricultural wastes towards extraction of renewable resources is recently being considered as a promising alternative to conventional biofuel production processes. Agricultural residues represent an abundant and…

Biological Physics · Physics 2021-11-17 Eric Behle , Adélaïde Raguin

Stochastic process discovery is concerned with deriving a model capable of reproducing the stochastic character of observed executions of a given process, stored in a log. This leads to an optimisation problem in which the model's parameter…

Formal Languages and Automata Theory · Computer Science 2025-05-01 Pierre Cry , Paolo Ballarini , András Horváth , Pascale Le Gall

Stochastic process models are now commonly used to analyse complex biological, ecological and industrial systems. Increasingly there is a need to deliver accurate estimates of model parameters and assess model fit by optimizing the timing…

Computation · Statistics 2018-09-18 Colin S. Gillespie , Richard J. Boys

The dynamics of cellular aggregates is driven by the interplay of mechanochemical processes and cellular activity. Although deterministic models may capture mechanical features, local chemical fluctuations trigger random cell responses,…

Soft Condensed Matter · Physics 2024-01-17 Ana Carpio , Elena Cebrian

The stochastic simulation of large-scale biochemical reaction networks is of great importance for systems biology since it enables the study of inherently stochastic biological mechanisms at the whole cell scale. Stochastic Simulation…

Molecular Networks · Quantitative Biology 2017-10-30 Elias S. Manolakos , Elias Kouskoumvekakis

In this work the robustness of a feedback optimization scheme is discussed. Previously known results in literature, on the convergence to local optima of the optimization problem of interest, are extended to the case where the sensitivities…

Optimization and Control · Mathematics 2021-04-01 Mirko Pasquini , Kévin Colin , Véronique Chotteau , Håkan Hjalmarsson

Renewable energy policies have driven the wood pellet market over the last decades worldwide. Among other factors, the return from this business depends largely on how well the producers manage the uncertainty associated with biomass yield…

Optimization and Control · Mathematics 2021-04-29 Amin Aghalari , Badr Saleh Aladwan , Bruno Silva , Shaun Tanger , Mohammad Marufuzzaman , Veera Gnaneswar Gude

In response to the escalating need for sustainable manufacturing, this study introduces a Simulation-Based Approach (SBA) to model a stopping policy for energy-intensive stochastic production systems, developed and tested in a real-world…

Systems and Control · Electrical Eng. & Systems 2025-08-13 Balwin Bokor , Klaus Altendorfer , Andrea Matta

Bioprocesses are central to modern biotechnology, enabling sustainable production in pharmaceuticals, specialty chemicals, cosmetics, and food. However, developing high-performing processes is costly and complex, requiring iterative,…

Quantitative Methods · Quantitative Biology 2025-08-18 Adrian Martens , Mathias Neufang , Alessandro Butté , Moritz von Stosch , Antonio del Rio Chanona , Laura Marie Helleckes

Rocking or wave-mixed bioreactors have emerged as a promising innovation in the production of cultivated meat due to their disposable nature, low operating costs, and scalability. However, despite these advantages, the performance of…

Fluid Dynamics · Physics 2025-04-09 Minki Kim , Daniel M. Harris , Radu Cimpeanu

Development and optimization of biopharmaceutical production processes with cell cultures is cost- and time-consuming and often performed rather empirically. Efficient optimization of multiple-objectives like process time, viable cell…

Machine Learning · Computer Science 2022-05-09 Tanja Hernández Rodríguez , Anton Sekulic , Markus Lange-Hegermann , Björn Frahm
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