Related papers: Root polytopes and Jaeger-type dissections for dir…
Symmetric edge polytopes of graphs and root polytopes of semi-balanced digraphs are two classes of lattice polytopes whose $h^*$-polynomials have interesting properties and generalize important graph polynomials. For both classes of…
Using a ribbon structure of the graph, we construct a dissection of the symmetric edge polytope of a graph into unimodular simplices. Our dissection is shellable, and one can interpret the elements of the resulting $h$-vector via graph…
In evolutionary biology, phylogenetic networks are graphs that provide a flexible framework for representing complex evolutionary histories that involve reticulate evolutionary events. Recently phylogenetic studies have started to focus on…
Triangulations of a product of two simplices and, more generally, of root polytopes are closely related to Gelfand-Kapranov-Zelevinsky's theory of discriminants, to tropical geometry, tropical oriented matroids, and to generalized…
This paper starts with an observation that two infinite series of simplicial complexes, which a priori do not seem to have anything to do with each other, have the same homotopy type. One series consists of the complexes of directed forests…
It has been previously shown by the authors that a directed graph on a linearly ordered set of edges (ordered graph) with adjacent unique source and sink (bipolar digraph) has a unique fully optimal spanning tree, that satisfies a simple…
In this article, Temperley's bijection between spanning trees of the square grid on the one hand, and perfect matchings (also known as dimer coverings) of the square grid on the other, is extended to the setting of general planar directed…
We present a bijection between some quadrangular dissections of an hexagon and unrooted binary trees, with interesting consequences for enumeration, mesh compression and graph sampling. Our bijection yields an efficient uniform random…
Semidirected networks have received interest in evolutionary biology as the appropriate generalization of unrooted trees to networks, in which some but not all edges are directed. Yet these networks lack proper theoretical study. We define…
To directed graphs with unique sink and source we associate a noncommutative associative alsgebra and a polynomial over this algebra. Edges of the graph correspond to pseudo-roots of the polynomial. We give a sufficient condition when…
In this paper, we consider the problem of reconstructing a directed graph using path queries. In this query model of learning, a graph is hidden from the learner, and the learner can access information about it with path queries. For a…
Quasi-trees generalize trees in that the unique "path" between two nodes may be infinite and have any countable order type. They are used to define the rank-width of a countable graph in such a way that it is equal to the least upper-bound…
This paper outlines a method to determine whether two label-regular directed trees, are isomorphic and when they are almost isomorphic. The approach involves reinterpreting label-regular directed trees as universal covers of rooted graphs.…
The active bijection forms a package of results studied by the authors in a series of papers in oriented matroids. The present paper is intended to state the main results in the particular case, and more widespread language, of graphs. We…
As a generalization of the Edmonds arborescence packing theorem, Kamiyama--Katoh--Takizawa (2009) gave a good characterization of directed graphs that contain arc-disjoint arborescences spanning the set of vertices reachable from each root.…
Adjacency polytopes, a.k.a. symmetric edge polytopes, associated with undirected graphs have been defined and studied in several seemingly independent areas including number theory, discrete geometry, and dynamical systems. In particular,…
In this paper, we survey some properties, encoding, and bijections involving combinatorial maps, double occurrence words, and chord diagrams. We particularly study quasi-trees from a purely combinatorial point of view and derive a…
The type C_n full root polytope is the convex hull in R^n of the origin and the points e_i-e_j, e_i+e_j, 2e_k for 1 <= i < j <= n, k \in [n]. Given a graph G, with edges labeled positive or negative, associate to each edge e of G a vector…
In this paper we study metric ribbon graphs, in particular, directed metric ribbon graphs. These ribbon graphs are dual to bipartite maps and appear in the context of Abelian differentials. We prove that it is possible to decompose a…
Directed graphs have long been used to gain understanding of the structure of semigroups, and recently the structure of directed graph semigroups has been investigated resulting in a characterization theorem and an analog of Fruct's…