Related papers: Compatibility of Partitions with Trees, Hierarchie…
Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a…
A recent paper (Manceau and Lambert, 2016) developed a novel approach for describing two well-defined notions of 'species' based on a phylogenetic tree and a phenotypic partition. In this paper, we explore some further combinatorial…
We say that a tree $T$ is an $S$-Steiner tree if $S \subseteq V(T)$ and a hypergraph is an $S$-Steiner hypertree if it can be trimmed to an $S$-Steiner tree. We prove that it is NP-complete to decide, given a hypergraph $\mathcal{H}$ and…
The notion of $\mathcal{H}$-treewidth, where $\mathcal{H}$ is a hereditary graph class, was recently introduced as a generalization of the treewidth of an undirected graph. Roughly speaking, a graph of $\mathcal{H}$-treewidth at most $k$…
$H$-Packing is the problem of finding a maximum number of vertex-disjoint copies of $H$ in a given graph $G$. $H$-Partition is the special case of finding a set of vertex-disjoint copies that cover each vertex of $G$ exactly once. Our goal…
The paper addresses design/building frameworks for some kinds of tree-like and hierarchical structures of systems. The following approaches are examined: (1) expert-based procedures, (2) hierarchical clustering; (3) spanning problems (e.g.,…
We study the optimization version of the set partition problem (where the difference between the partition sums are minimized), which has numerous applications in decision theory literature. While the set partitioning problem is NP-hard and…
Fixed parameter tractable algorithms for bounded treewidth are known to exist for a wide class of graph optimization problems. While most research in this area has been focused on exact algorithms, it is hard to find decompositions of…
We show NP-completeness for various problems about the existence of arithmetic expression trees. When given a set of operations, inputs, and a target value does there exist an expression tree with those inputs and operations that evaluates…
Merge trees are fundamental structures in topological data analysis. Interleaving distance is a widely accepted metric for comparing merge trees, with applications in visualization and scientific computing. While a greedy algorithm exists…
Our main result is a full classification, for every connected graph $H$, of the computational complexity of Steiner Forest on $H$-subgraph-free graphs. To obtain this dichotomy, we establish the following new algorithmic, hardness, and…
Structural decomposition methods, such as generalized hypertree decompositions, have been successfully used for solving constraint satisfaction problems (CSPs). As decompositions can be reused to solve CSPs with the same constraint scopes,…
The combinatorial properties of partitions with various restrictions on their hooksets are explored. A connection with numerical semigroups extends current results on simultaneous s/t-cores. Conditions that suffice for a partition to…
Network partitioning has gained recent attention as a pathway to enable decentralized operation and control in large-scale systems. This paper addresses the interplay between partitioning, observability, and sensor placement (SP) in dynamic…
The local refinement of PHT-splines (polynomial splines over hierarchical T-meshes) is achieved by a simple cross insertion, which may introduce superfluous control points or coefficients. By allowing split-in-half in mesh refinement,…
Despite remarkable achievements in its practical tractability, the notorious class of NP-complete problems has been escaping all attempts to find a worst-case polynomial time-bound solution algorithms for any of them. The vast majority of…
Chordal graphs are intersection graphs of subtrees of a tree T. We investigate the complexity of the partial representation extension problem for chordal graphs. A partial representation specifies a tree T' and some pre-drawn subtrees of…
We study two computational problems, parameterised by a fixed tree H. #HomsTo(H) is the problem of counting homomorphisms from an input graph G to H. #WHomsTo(H) is the problem of counting weighted homomorphisms to H, given an input graph G…
We consider a natural variant of the well-known Feedback Vertex Set problem, namely the problem of deleting a small subset of vertices or edges to a full binary tree. This version of the problem is motivated by real-world scenarios that are…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…