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Transfer learning aims to enhance performance on a target task by using knowledge from related tasks. However, when the source and target tasks are not closely aligned, it can lead to reduced performance, known as negative transfer. Unlike…

Machine Learning · Computer Science 2024-05-07 Zehong Wang , Zheyuan Zhang , Chuxu Zhang , Yanfang Ye

Graph Neural Networks (GNNs) have received increasing attention due to their ability to learn from graph-structured data. However, their predictions are often not interpretable. Post-hoc instance-level explanation methods have been proposed…

Machine Learning · Computer Science 2023-07-18 Jiaxing Zhang , Dongsheng Luo , Hua Wei

Deep neural networks suffer from poor generalization to unseen environments when the underlying data distribution is different from that in the training set. By learning minimum sufficient representations from training data, the information…

Machine Learning · Computer Science 2021-10-13 Francesco Alesiani , Shujian Yu , Xi Yu

Elucidating and accurately predicting the druggability and bioactivities of molecules plays a pivotal role in drug design and discovery and remains an open challenge. Recently, graph neural networks (GNN) have made remarkable advancements…

Machine Learning · Computer Science 2022-08-31 Weimin Zhu , Yi Zhang , DuanCheng Zhao , Jianrong Xu , Ling Wang

Pooling operations have shown to be effective on computer vision and natural language processing tasks. One challenge of performing pooling operations on graph data is the lack of locality that is not well-defined on graphs. Previous…

Machine Learning · Computer Science 2020-10-21 Hongyang Gao , Yi Liu , Shuiwang Ji

Recent work in graph neural networks (GNNs) has led to improvements in molecular activity and property prediction tasks. Unfortunately, GNNs often fail to capture the relative importance of interactions between molecular substructures, in…

Machine Learning · Computer Science 2020-04-03 Emmanuel Noutahi , Dominique Beaini , Julien Horwood , Sébastien Giguère , Prudencio Tossou

Deep Neural Nets (DNNs) learn latent representations induced by their downstream task, objective function, and other parameters. The quality of the learned representations impacts the DNN's generalization ability and the coherence of the…

Machine Learning · Computer Science 2024-02-13 Nir Weingarten , Zohar Yakhini , Moshe Butman , Ran Gilad-Bachrach

Graph-structured data naturally occurs in many research fields, such as chemistry and sociology. The relational information contained therein can be leveraged to statistically model graph properties through geometrical deep learning. Graph…

Machine Learning · Computer Science 2024-09-19 T. Snelleman , B. M. Renting , H. H. Hoos , J. N. van Rijn

Graph Neural Network (GNN) research has concentrated on improving convolutional layers, with little attention paid to developing graph pooling layers. Yet pooling layers can enable GNNs to reason over abstracted groups of nodes instead of…

Machine Learning · Computer Science 2019-05-28 Frederik Diehl

We propose a novel graph cross network (GXN) to achieve comprehensive feature learning from multiple scales of a graph. Based on trainable hierarchical representations of a graph, GXN enables the interchange of intermediate features across…

Machine Learning · Computer Science 2020-10-20 Maosen Li , Siheng Chen , Ya Zhang , Ivor W. Tsang

Graph representation learning has attracted increasing research attention. However, most existing studies fuse all structural features and node attributes to provide an overarching view of graphs, neglecting finer substructures' semantics,…

Machine Learning · Computer Science 2021-05-25 Qingyun Sun , Jianxin Li , Hao Peng , Jia Wu , Yuanxing Ning , Phillip S. Yu , Lifang He

The Information Bottleneck (IB) framework is a general characterization of optimal representations obtained using a principled approach for balancing accuracy and complexity. Here we present a new framework, the Dual Information Bottleneck…

Information Theory · Computer Science 2020-06-09 Zoe Piran , Ravid Shwartz-Ziv , Naftali Tishby

Graph pooling is commonly applied in graph classification, yet its empirical gains over standard WL-1 expressive GNNs are often marginal or inconsistent. We study this gap by analysing the interaction between node features and graph…

Machine Learning · Computer Science 2026-05-08 Jan von Pichowski , Alžbeta Hrabošová , Ingo Scholtes , Christopher Blöcker

The task of identifying multimodal image-text representations has garnered increasing attention, particularly with models such as CLIP (Contrastive Language-Image Pretraining), which demonstrate exceptional performance in learning complex…

Computer Vision and Pattern Recognition · Computer Science 2025-02-24 Zhiyu Zhu , Zhibo Jin , Jiayu Zhang , Nan Yang , Jiahao Huang , Jianlong Zhou , Fang Chen

Graph Neural Networks (GNNs) have achieved strong performance across a range of graph representation learning tasks, yet their adversarial robustness in graph classification remains underexplored compared to node classification. While most…

Machine Learning · Computer Science 2025-10-28 Sofiane Ennadir , Oleg Smirnov , Yassine Abbahaddou , Lele Cao , Johannes F. Lutzeyer

We introduce Graph Concept Bottleneck (GCB) as a new paradigm for self-explainable text-attributed graph learning. GCB maps graphs into a subspace, concept bottleneck, where each concept is a meaningful phrase, and predictions are made…

Machine Learning · Computer Science 2026-04-15 Xiaoxue Han , Libo Zhang , Zining Zhu , Yue Ning

As Graph Neural Networks (GNNs) become increasingly prevalent in a variety of fields, from social network analysis to protein-protein interaction studies, growing concerns have emerged regarding the unauthorized utilization of personal…

Cryptography and Security · Computer Science 2023-10-12 Yixin Liu , Chenrui Fan , Xun Chen , Pan Zhou , Lichao Sun

Heterophilic Graph Neural Networks (HGNNs) have shown promising results for semi-supervised learning tasks on graphs. Notably, most real-world heterophilic graphs are composed of a mixture of nodes with different neighbor patterns,…

Machine Learning · Computer Science 2025-02-26 Jinluan Yang , Zhengyu Chen , Teng Xiao , Wenqiao Zhang , Yong Lin , Kun Kuang

The fruits of science are relationships made comprehensible, often by way of approximation. While deep learning is an extremely powerful way to find relationships in data, its use in science has been hindered by the difficulty of…

Machine Learning · Computer Science 2022-04-18 Kieran A. Murphy , Dani S. Bassett

Recent advancements in graph representation learning have led to the emergence of condensed encodings that capture the main properties of a graph. However, even though these abstract representations are powerful for downstream tasks, they…

Machine Learning · Computer Science 2020-02-21 Cristian Bodnar , Cătălina Cangea , Pietro Liò
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