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In this paper we study the problem of inferring the initial conditions of a dynamical system under incomplete information. Studying several model systems, we infer the latent microstates that best reproduce an observed time series when the…

Dynamical Systems · Mathematics 2022-04-04 Blas Kolic , Juan Sabuco , J. Doyne Farmer

We use energetic considerations to deduce the form of a previously uncertain coupling term in the shear-transformation-zone (STZ) theory of plastic deformation in amorphous solids. As in the earlier versions of the STZ theory, the onset of…

Materials Science · Physics 2009-11-10 J. S. Langer , L. Pechenik

The Vlasov-Poisson system describes the time evolution of a plasma in the so-called collisionless regime. The investigation of a high-temperature plasma that is influenced by an exterior magnetic field is one of the most significant aspects…

Optimization and Control · Mathematics 2024-07-11 Jan Bartsch , Patrik Knopf , Stefania Scheurer , Jörg Weber

Molecular dynamics simulations of biomolecules have been widely adopted in biomedical studies. As classical point-charge models continue to be used in routine biomolecular applications, there have been growing demands on developing…

Computational Physics · Physics 2020-10-28 Haixin Wei , Ruxi Qi , Junmei Wang , Piotr Cieplak , Yong Duan , Ray Luo

We present a framework for constructing physics and causally constrained neural models of turbulent dynamical systems from data. We first formulate a finite-time flow map with strict energy-preserving nonlinearities for stable modeling of…

Chaotic Dynamics · Physics 2026-04-15 Fabrizio Falasca , Laure Zanna

The recently developed generalized Fourier-Galerkin method is complemented by a numerical continuation with respect to the kinetic energy, which extends the framework to the investigation of modal interactions resulting in folds of the…

Numerical Analysis · Mathematics 2021-01-07 Malte Krack , Lars Panning-von Scheidt , Jörg Wallaschek

Many open problems in the Earth sciences can only be understood by modelling the porous flow of melt through a viscously deforming solid rock matrix. However, the system of equations describing this process becomes mathematically degenerate…

Geophysics · Physics 2019-06-26 Juliane Dannberg , Rene Gassmöller , Ryan Grove , Timo Heister

We present a generalization of Extended Lagrangian Born-Oppenheimer molecular dynamics [Phys. Rev. Lett. vol. 100, 123004 (2008); Eur. Phys. J. B vol. 94, 164 (2021)] that also includes the electronic spin-degrees of freedom as extended…

We investigate the approximate dynamics of several differential equations when the solutions are restricted to a sparse subset of a given basis. The restriction is enforced at every time step by simply applying soft thresholding to the…

Numerical Analysis · Mathematics 2015-06-12 Hayden Schaeffer , Stanley Osher , Russel Caflisch , Cory Hauck

A rigourous Monte Carlo method for protein folding simulation on lattice model is introduced. We show that a parameter which can be seen as the rigidity of the conformations has to be introduced in order to satisfy the detailed balance…

Soft Condensed Matter · Physics 2007-05-23 Olivier Collet

The article proposes generalizations of the macroscopic model of plasma of scalar charged particles to the cases of inter-particle interaction with multiple scalar fields and negative effective masses of these particles. The model is based…

General Relativity and Quantum Cosmology · Physics 2015-04-15 Yu. G. Ignat'ev

To leverage the redundancy between the electronic structure computed at each step of first-principles molecular dynamics, we present a data-driven modeling framework for Kohn-Sham Density Functional Theory that bypasses the explicit…

Numerical Analysis · Mathematics 2026-02-27 Siu Wun Cheung , Youngsoo Choi , Jean-Luc Fattebert , Jonas Kaufman , Daniel Osei-Kuffuor

A simplified formalism of first quantized massless fields of any spin is presented. The angular momentum basis for particles of zero mass and finite spin s of the D^(s-1/2,1/2) representation of the Lorentz group is used to describe the…

High Energy Physics - Theory · Physics 2016-02-01 Alexander Gersten , Amnon Moalem

Small magnetic particles placed in a relatively soft polymer (with elastic modulus E ~ 10-100 kPa) are magnetically soft elastomers. The external magnetic field acts on each particle which leads to microscopic deformation of the material…

Soft Condensed Matter · Physics 2015-12-25 Petr Andriushchenko , Leonid Afremov , Mariya Chernova

In the paper a self-consistent theoretical description of the lattice and magnetic properties of a model system with magnetoelastic interaction is presented. The dependence of magnetic exchange integrals on the distance between interacting…

Statistical Mechanics · Physics 2016-12-07 T. Balcerzak , K. Szałowski , M. Jaščur

The issue of finite magnetic compressibility in low-beta magnetised plasmas is considered within the gyrokinetic description. The gauge transformation method of Littlejohn is used to obtain a Lagrangian which contains this effect…

Plasma Physics · Physics 2024-05-30 Bruce D. Scott

We introduce the boundary conditions corresponding to the imaginary-time (Matsubara) formalism for the finite-temperature partition function in $d+1$ dimensions as {\em constraints} in the path integral for the vacuum amplitude (the…

High Energy Physics - Theory · Physics 2007-05-23 C. D. Fosco , A. P. C. Malbouisson , I Roditi

This paper addresses synthesizing receding-horizon controllers for nonlinear, control-affine dynamical systems under multiple incompatible hard and soft constraints. Handling incompatibility of constraints has mostly been addressed in…

Robotics · Computer Science 2023-10-17 Hardik Parwana , Ruiyang Wang , Dimitra Panagou

The planet Mercury possesses a small but highly dynamic magnetosphere in which the role and dynamics of electrons are still largely unknown. We aim at modeling the global dynamics of solar wind electrons impinging on Mercury's…

We propose a new method to compute magnetic surfaces that are parametrized in Boozer coordinates for vacuum magnetic fields. We also propose a measure for quasi-symmetry on the computed surfaces and use it to design coils that generate a…

Plasma Physics · Physics 2022-08-17 Andrew Giuliani , Florian Wechsung , Matt Landreman , Georg Stadler , Antoine Cerfon