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Multiple sequence alignment (MSA) has been one of the most important problems in bioinformatics for more decades and it is still heavily examined by many mathematicians and biologists. However, mostly because of the practical motivation of…

Quantitative Methods · Quantitative Biology 2015-11-17 Kristóf Takács

This paper is concerned with the ordered statistic decoding with local constraints (LC-OSD) of binary linear block codes, which is a near maximum-likelihood decoding algorithm. Compared with the conventional OSD, the LC-OSD significantly…

Information Theory · Computer Science 2024-01-31 Jifan Liang , Xiao Ma

We revisit the classic combinatorial pattern matching problem of finding a longest common subsequence (LCS). For strings $x$ and $y$ of length $n$, a textbook algorithm solves LCS in time $O(n^2)$, but although much effort has been spent,…

Computational Complexity · Computer Science 2018-03-05 Karl Bringmann , Marvin Künnemann

Subspace codes are collections of subspaces of a projective space such that any two subspaces satisfy a pairwise minimum distance criterion. Recent results have shown that it is possible to construct optimal $(5,3)$ subspace codes from…

Information Theory · Computer Science 2021-05-05 Anirban Ghatak , Sumanta Mukherjee

The code written by developers usually suffers from efficiency problems and contain various performance bugs. These inefficiencies necessitate the research of automated refactoring methods for code optimization. Early research in code…

Software Engineering · Computer Science 2024-08-23 Shuzheng Gao , Cuiyun Gao , Wenchao Gu , Michael Lyu

This work identifies information-theoretic quantities that are closely related to the required list size on average for successive cancellation list (SCL) decoding to implement maximum-likelihood decoding over general binary memoryless…

Information Theory · Computer Science 2022-04-04 Mustafa Cemil Coşkun , Henry D. Pfister

Regular spatially-Coupled LDPC (SC-LDPC) ensembles have gained significant interest since they were shown to universally achieve the capacity of binary memoryless channels under low-complexity belief-propagation decoding. In this work, we…

Information Theory · Computer Science 2018-02-20 Vahid Aref , Narayanan Rengaswamy , Laurent Schmalen

The Binary Jumbled String Matching problem is defined as: Given a string $s$ over $\{a,b\}$ of length $n$ and a query $(x,y)$, with $x,y$ non-negative integers, decide whether $s$ has a substring $t$ with exactly $x$ $a$'s and $y$ $b$'s.…

Data Structures and Algorithms · Computer Science 2013-06-03 Golnaz Badkobeh , Gabriele Fici , Steve Kroon , Zsuzsanna Lipták

In recent years, Signal Temporal Logic (STL) has gained traction as a practical and expressive means of encoding control objectives for robotic and cyber-physical systems. The state-of-the-art in STL trajectory synthesis is to formulate the…

Robotics · Computer Science 2019-05-09 Vince Kurtz , Hai Lin

Learning compact binary codes for image retrieval problem using deep neural networks has recently attracted increasing attention. However, training deep hashing networks is challenging due to the binary constraints on the hash codes. In…

Computer Vision and Pattern Recognition · Computer Science 2019-09-02 Thanh-Toan Do , Tuan Hoang , Dang-Khoa Le Tan , Anh-Dzung Doan , Ngai-Man Cheung

Motivated by applications in polymer-based data storage we introduced the new problem of characterizing the code rate and designing constant-weight binary $B_2$-sequences. Binary $B_2$-sequences are collections of binary strings of length…

Information Theory · Computer Science 2023-03-24 Jin Sima , Yun-Han Li , Ilan Shomorony , Olgica Milenkovic

We consider locally repairable codes over small fields and propose constructions of optimal cyclic and linear codes in terms of the dimension for a given distance and length. Four new constructions of optimal linear codes over small fields…

Information Theory · Computer Science 2016-11-17 Alexander Zeh , Eitan Yaakobi

Unimodular sequences with good auto/cross-correlation properties are favorable in wireless communication and radar applications. In this paper, we focus on designing these kinds of sequences. The main content is as follows: first, we…

Signal Processing · Electrical Eng. & Systems 2019-07-16 Yongchao Wang , Jiangtao Wang

Representing visual data using compact binary codes is attracting increasing attention as binary codes are used as direct indices into hash table(s) for fast non-exhaustive search. Recent methods show that ranking binary codes using…

Data Structures and Algorithms · Computer Science 2023-06-07 Zhenyu Weng , Huiping Zhuang , Haizhou Li , Zhiping Lin

This paper is focused on the performance analysis of binary linear block codes (or ensembles) whose transmission takes place over independent and memoryless parallel channels. New upper bounds on the maximum-likelihood (ML) decoding error…

Information Theory · Computer Science 2007-07-13 I. Sason , I. Goldenberg

Deep supervised hashing is essential for efficient storage and search in large-scale image retrieval. Traditional deep supervised hashing models generate single-length hash codes, but this creates a trade-off between efficiency and…

Computer Vision and Pattern Recognition · Computer Science 2025-06-02 Liyang He , Yuren Zhang , Rui Li , Zhenya Huang , Runze Wu , Enhong Chen

The Integrated Side Lobe Ratio (ISLR) problem we consider here consists in finding optimal sequences of phase shifts in order to minimize the mean squared cross-correlation side lobes of a transmitted radar signal and a mismatched replica.…

Emerging Technologies · Computer Science 2023-10-23 Timothe Presles , Cyrille Enderli , Gilles Burel , El Houssain Baghious

It has been shown that the parallel Lattice Linear Predicate (LLP) algorithm solves many combinatorial optimization problems such as the shortest path problem, the stable marriage problem and the market clearing price problem. In this…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-11 Vijay K. Garg

Recent sequential pattern mining methods have used the minimum description length (MDL) principle to define an encoding scheme which describes an algorithm for mining the most compressing patterns in a database. We present a novel…

Machine Learning · Statistics 2016-11-14 Jaroslav Fowkes , Charles Sutton

Binary $m$-sequences are ones with the largest period $n=2^m-1$ among the binary sequences produced by linear shift registers with length $m$. They have a wide range of applications in communication since they have several desirable…

Information Theory · Computer Science 2022-12-01 Xiaoyan Jing , Aixian Zhang , Keqin Feng