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We incorporate explicit, non-perturbative treatment of spin-orbit coupling into ab initio auxiliary-field quantum Monte Carlo (AFQMC) calculations. The approach allows a general computational framework for molecular and bulk systems in…

Strongly Correlated Electrons · Physics 2023-02-16 Brandon Eskridge , Henry Krakauer , Hao Shi , Shiwei Zhang

Atomistic-to-Continuum (AtC) coupling methods are a novel means of computing the properties of a discrete crystal structure, such as those containing defects, that combine the accuracy of an atomistic (fully discrete) model with the…

Numerical Analysis · Mathematics 2013-09-25 Derek Olson , Pavel Bochev , Mitchell Luskin , Alexander V. Shapeev

We introduce a powerful iterative algorithm to compute protein folding pathways, with realistic all-atom force fields. Using the path integral formalism, we explicitly derive a modified Langevin equation which samples directly the ensemble…

Biological Physics · Physics 2017-05-08 S. Orioli , S. A Beccara , P. Faccioli

Coupling constants of the pseudoscalar mesons to the octet baryons are calculated in the QCD sum rule approach. Two-point correlation function of the baryons are evaluated in a single meson state and the vacuum, which yields the designated…

High Energy Physics - Phenomenology · Physics 2011-07-19 Takumi Doi , Yoshihiko Kondo , Makoto Oka

We shall derive and propose several efficient overlapping domain decomposition methods for solving some typical linear inverse problems, including the identiffication of the flux, the source strength and the initial temperature in second…

Numerical Analysis · Mathematics 2013-09-10 Jiang Daijun , Feng Hui , Zou Jun

The cornerstone of computational drug design is the calculation of binding affinity between two biological counterparts, especially a chemical compound, i.e., a ligand, and a protein. Predicting the strength of protein-ligand binding with…

Biomolecules · Quantitative Biology 2019-12-04 Yanjun Li , Mohammad A. Rezaei , Chenglong Li , Xiaolin Li , Dapeng Wu

We present a numerical method for convergence acceleration for multifidelity models of parameterized ordinary differential equations. The hierarchy of models is defined as trajectories computed using different timesteps in a time…

Numerical Analysis · Mathematics 2018-08-13 Vahid Keshavarzzadeh , Robert M. Kirby , Akil Narayan

We extend the FE-DMN method to fully coupled thermomechanical two-scale simulations of composite materials. In particular, every Gauss point of the macroscopic finite element model is equipped with a deep material network (DMN). Such a DMN…

Computational Engineering, Finance, and Science · Computer Science 2021-11-30 Sebastian Gajek , Matti Schneider , Thomas Böhlke

Conformal surface parameterization is useful in graphics, imaging and visualization, with applications to texture mapping, atlas construction, registration, remeshing and so on. With the increasing capability in scanning and storing data,…

Computational Geometry · Computer Science 2020-07-06 Gary P. T. Choi , Yusan Leung-Liu , Xianfeng Gu , Lok Ming Lui

Theoretical descriptions of excited states of molecular systems in high-energy regimes are crucial for supporting and driving many experimental efforts at light source facilities. However, capturing their complicated correlation effects…

This paper presents results and convergence study of the Global--Local Iterative Coupling through the implementation in the commercial software Abaqus making use of the co-simulation engine. A hierarchical modeling and simulation approach…

Numerical Analysis · Mathematics 2024-04-25 Omar Bettinotti , Stéphane Guinard , Eric Véron , Pierre Gosselet

Subsurface flows are commonly modeled by advection-diffusion equations. Insufficient measurements or uncertain material procurement may be accounted for by random coefficients. To represent, for example, transitions in heterogeneous media,…

Numerical Analysis · Mathematics 2021-01-25 Andrea Barth , Andreas Stein

The novel non-isothermal Hot Forming and cold die Quenching (HFQ) process can enable the cost-effective production of complex shaped, high strength aluminium alloy panel components. However, the unfamiliarity of designing for the new…

Computational Engineering, Finance, and Science · Computer Science 2021-04-28 Hamid Reza Attar , Haosu Zhou , Alistair Foster , Nan Li

Based on the microscopic model, the friction coefficient for the relative motion of nuclei in deep-inelastic heavy-ion collisions is calculated. The radial dependence of the friction coefficient is studied and the results are compared with…

Nuclear Theory · Physics 2008-11-26 G. G. Adamian , R. V. Jolos , A. K. Nasirov , A. I. Muminov

One approach to achieving correct finite element assembly is to ensure that the local orientation of facets relative to each cell in the mesh is consistent with the global orientation of that facet. Rognes et al. have shown how to achieve…

Mathematical Software · Computer Science 2016-11-17 Miklós Homolya , David A. Ham

Elucidating the biomechanical behavior of the myocardium is crucial for understanding cardiac physiology, but cannot be directly inferred from clinical imaging and typically requires finite element (FE) simulations. However, conventional FE…

Medical Physics · Physics 2025-06-27 Siyu Mu , Wei Xuan Chan , Choon Hwai Yap

In this article, we propose a new method for calculating the mixed correlation coefficient (Pearson, polyserial and polychoric) matrix and its covariance matrix based on the GMM framework. We build moment equations for each coefficient and…

Computation · Statistics 2024-04-11 Ben Liu , Peng Zhang , Yi Feng , Xiaowei Lou

As more and more multiphysics effects are entering the field of CFD simulations, this raises the question how they can be accurately captured in gradient computations for shape optimization. The latter has been successfully enriched over…

Computational Physics · Physics 2018-11-02 Ole Burghardt , Nicolas R. Gauger

We present a method to determine the complex coupling parameter of a two-coupled-modes system by directly measuring the coupled eigenmodes rather than their eigenvalues. This method is useful because mode-mixing can be observed even if…

Optics · Physics 2022-01-19 C. Koks , M. P. van Exter

The oversampling multiscale finite element method (MsFEM) is one of the most popular methods for simulating composite materials and flows in porous media which may have many scales. But the method may be inapplicable or inefficient in some…

Numerical Analysis · Mathematics 2012-11-16 Weibing Deng , Haijun Wu