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Approaches to signal representation and coding theory have traditionally focused on how to best represent signals using parsimonious representations that incur the lowest possible distortion. Classical examples include linear and non-linear…

Information Theory · Computer Science 2015-12-25 Petros T Boufounos , Shantanu Rane , Hassan Mansour

A fundamental cognitive process is the ability to map value and identity onto objects as we learn about them. Exactly how such mental constructs emerge and what kind of space best embeds this mapping remains incompletely understood. Here we…

Neurons and Cognition · Quantitative Biology 2019-05-31 Evelyn Tang , Marcelo G. Mattar , Chad Giusti , Sharon L. Thompson-Schill , Danielle S. Bassett

The underspecification of most machine learning pipelines means that we cannot rely solely on validation performance to assess the robustness of deep learning systems to naturally occurring distribution shifts. Instead, making sure that a…

Neural decoding, the process of understanding how brain activity corresponds to different stimuli, has been a primary objective in cognitive sciences. Over the past three decades, advances in functional Magnetic Resonance Imaging (fMRI) and…

Computer Vision and Pattern Recognition · Computer Science 2026-01-28 Yanchen Wang , Adam Turnbull , Tiange Xiang , Yunlong Xu , Sa Zhou , Adnan Masoud , Shekoofeh Azizi , Feng Vankee Lin , Ehsan Adeli

We propose a novel and efficient algorithm to model high-level topological structures of neuronal fibers. Tractography constructs complex neuronal fibers in three dimensions that exhibit the geometry of white matter pathways in the brain.…

Computer Vision and Pattern Recognition · Computer Science 2021-08-04 S. Shailja , Angela Zhang , B. S. Manjunath

The human brain is a complex inter-wired system that emerges spontaneous functional fluctuations. In spite of tremendous success in the experimental neuroscience field, a system-level understanding of how brain anatomy supports various…

Neurons and Cognition · Quantitative Biology 2024-05-28 Tingting Dan , Ziquan Wei , Won Hwa Kim , Guorong Wu

Understanding how receptive fields emerge and organize within brain networks and how neural dynamics couple with stimuli space is fundamental to neuroscience. Models often rely on fine-tuning connectivity to match empirical data, which may…

Neurons and Cognition · Quantitative Biology 2026-01-07 Vasilii Tiselko , Alexander Gorsky , Yuri Dabaghian

Deep convolutional neural networks (CNNs) trained on objects and scenes have shown intriguing ability to predict some response properties of visual cortical neurons. However, the factors and computations that give rise to such ability, and…

Neurons and Cognition · Quantitative Biology 2018-06-11 Md Nasir Uddin Laskar , Luis G Sanchez Giraldo , Odelia Schwartz

How do different brains create unique visual experiences from identical sensory input? While neural representations vary across individuals, the fundamental architecture underlying these differences remains poorly understood. Here, we…

Neurons and Cognition · Quantitative Biology 2026-02-05 Chihye Han , Michael F. Bonner

Brain decoding algorithms form an important part of the arsenal of analysis tools available to neuroscientists, allowing for a more detailed study of the kind of information represented in patterns of cortical activity. While most current…

Quantitative Methods · Quantitative Biology 2017-08-17 R. S. van Bergen , J. F. M. Jehee

The subcortical sensory pathways are the fundamental channels for mapping the outside world to our minds. Sensory pathways efficiently transmit information by adapting neural responses to the local statistics of the sensory input. The…

Neurons and Cognition · Quantitative Biology 2020-03-26 Alejandro Tabas , Glad Mihai , Stefan Kiebel , Robert Trampel , Katharina von Kriegstein

A neural code $\mathcal{C}$ is a collection of binary vectors of a given length n that record the co-firing patterns of a set of neurons. Our focus is on neural codes arising from place cells, neurons that respond to geographic stimulus. In…

Neurons and Cognition · Quantitative Biology 2016-07-05 Elizabeth Gross , Nida Kazi Obatake , Nora Youngs

Whatever information a deep neural network has gleaned from training data is encoded in its weights. How this information affects the response of the network to future data remains largely an open question. Indeed, even defining and…

Machine Learning · Computer Science 2020-06-23 Alessandro Achille , Giovanni Paolini , Stefano Soatto

We propose an end-to-end deep neural encoder-decoder model to encode and decode brain activity in response to naturalistic stimuli using functional magnetic resonance imaging (fMRI) data. Leveraging temporally correlated input from…

Computer Vision and Pattern Recognition · Computer Science 2025-07-17 Florian David , Michael Chan , Elenor Morgenroth , Patrik Vuilleumier , Dimitri Van De Ville

Understanding of the phenomena of vision and thought require clarification of the general mechanism of perception. So far, philosophical inquiries and scientific investigations have not been able to address clearly the mysteries surrounding…

Neurons and Cognition · Quantitative Biology 2019-09-16 Jahan N. Schad

The ongoing exponential rise in recording capacity calls for new approaches for analysing and interpreting neural data. Effective dimensionality has emerged as an important property of neural activity across populations of neurons, yet…

Neurons and Cognition · Quantitative Biology 2021-08-30 Mehrdad Jazayeri , Srdjan Ostojic

Our sensory systems transform external signals into neural activity, thereby producing percepts. We are endowed with an intuitive notion of similarity between percepts, that need not reflect the proximity of the physical properties of the…

Neurons and Cognition · Quantitative Biology 2023-06-22 Nicolás Vattuone , Thomas Wachtler , Inés Samengo

Geometric algebra is an optimal frame work for calculating with vectors. The geometric algebra of a space includes elements that represent all the its subspaces (lines, planes, volumes, ...). Conformal geometric algebra expands this…

Computer Vision and Pattern Recognition · Computer Science 2013-06-07 Eckhard Hitzer

Neural implicit representations, which encode a surface as the level set of a neural network applied to spatial coordinates, have proven to be remarkably effective for optimizing, compressing, and generating 3D geometry. Although these…

Computer Vision and Pattern Recognition · Computer Science 2022-06-27 Nicholas Sharp , Alec Jacobson

Sensory information propagates through successive processing stages in the brain, where synaptic weight patterns between stations determine how downstream neurons decode information from upstream populations. Although optimized synaptic…

Neurons and Cognition · Quantitative Biology 2026-02-26 Ori Hendler , Ronen Segev , Maoz Shamir
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