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Gene annotation has traditionally required direct comparison of DNA sequences between an unknown gene and a database of known ones using string comparison methods. However, these methods do not provide useful information when a gene does…

Machine Learning · Computer Science 2019-09-17 James K. Senter , Taylor M. Royalty , Andrew D. Steen , Amir Sadovnik

The task of calculating similarities between strings held by different organizations without revealing these strings is an increasingly important problem in areas such as health informatics, national censuses, genomics, and fraud detection.…

Databases · Computer Science 2021-04-08 Sirintra Vaiwsri , Thilina Ranbaduge , Peter Christen , Kee Siong Ng

Entity linking aims to link ambiguous mentions to their corresponding entities in a knowledge base, which is significant and fundamental for various downstream applications, e.g., knowledge base completion, question answering, and…

Computation and Language · Computer Science 2022-07-20 Xiuxing Li , Zhenyu Li , Zhengyan Zhang , Ning Liu , Haitao Yuan , Wei Zhang , Zhiyuan Liu , Jianyong Wang

Handling missing values in training datasets for constructing learning models or extracting useful information is considered to be an important research task in data mining and knowledge discovery in databases. In recent years, lot of…

Databases · Computer Science 2009-04-22 Shariq Bashir , Saad Razzaq , Umer Maqbool , Sonya Tahir , Abdul Rauf Baig

In many healthcare and social science applications, information about units is dispersed across multiple data files. Linking records across files is necessary to estimate the associations of interest. Common record linkage algorithms only…

Methodology · Statistics 2024-06-25 Gauri Kamat , Mingyang Shan , Roee Gutman

Record linkage has been extensively used in various data mining applications involving sharing data. While the amount of available data is growing, the concern of disclosing sensitive information poses the problem of utility vs privacy. In…

Databases · Computer Science 2012-08-15 Luca Bonomi , Li Xiong , Rui Chen , Benjamin C. M. Fung

To discover new insights from data, there is a growing need to share information that is often held by different organisations. One key task in data integration is the calculation of similarities between records in different databases to…

Databases · Computer Science 2025-11-04 Sirintra Vaiwsri , Thilina Ranbaduge

Record linkage means linking data from multiple sources. This approach enables the answering of scientific questions that cannot be addressed using single data sources due to limited variables. The potential of linked data for health…

Synthesizing relational data has started to receive more attention from researchers, practitioners, and industry. The task is more difficult than synthesizing a single table due to the added complexity of relationships between tables. For…

Databases · Computer Science 2024-10-07 Valter Hudovernik , Martin Jurkovič , Erik Štrumbelj

Merging datasets is a key operation for data analytics. A frequent requirement for merging is joining across columns that have different surface forms for the same entity (e.g., the name of a person might be represented as "Douglas Adams"…

Machine Learning · Computer Science 2018-09-06 Kavitha Srinivas , Abraham Gale , Julian Dolby

In the distributed and dynamic framework of the Web, data quality is a big challenge. The Linked Open Data (LOD) provides an enormous amount of data, the quality of which is difficult to control. Quality is intrinsically a matter of usage,…

Databases · Computer Science 2021-07-14 Jacques Chabin , Mirian Halfeld-Ferrari , Béatrice Markhoff , Thanh Binh Nguyen

Businesses, governmental bodies and NGO's have an ever-increasing amount of data at their disposal from which they try to extract valuable information. Often, this needs to be done not only accurately but also within a short time frame.…

Machine Learning · Computer Science 2021-09-16 Pim Verschuuren , Serena Palazzo , Tom Powell , Steve Sutton , Alfred Pilgrim , Michele Faucci Giannelli

We discuss long-term preservation of and access to relational databases. The focus is on national archives and science data archives which have to ingest and integrate data from a broad spectrum of vendor-specific relational database…

Digital Libraries · Computer Science 2007-05-23 Stephan Heuscher , Stephan Jaermann , Peter Keller-Marxer , Frank Moehle

Many web databases can be seen as providing partial and overlapping information about entities in the world. To answer queries effectively, we need to integrate the information about the individual entities that are fragmented over multiple…

Databases · Computer Science 2011-02-01 Ravi Gummadi , Anupam Khulbe , Aravind Kalavagattu , Sanil Salvi , Subbarao Kambhampati

Fact tracing seeks to identify specific training examples that serve as the knowledge source for a given query. Existing approaches to fact tracing rely on assessing the similarity between each training sample and the query along a certain…

Computation and Language · Computer Science 2024-04-24 Si Chen , Feiyang Kang , Ning Yu , Ruoxi Jia

Clinical coding is a critical task in healthcare, although traditional methods for automating clinical coding may not provide sufficient explicit evidence for coders in production environments. This evidence is crucial, as medical coders…

Computation and Language · Computer Science 2025-04-08 Leonor Barreiros , Isabel Coutinho , Gonçalo M. Correia , Bruno Martins

This study applies Large Language Models (LLMs) to two foundational Electronic Health Record (EHR) data science tasks: structured data querying (using programmatic languages, Python/Pandas) and information extraction from unstructured…

Computation and Language · Computer Science 2026-01-29 Juan Jose Rubio Jan , Jack Wu , Julia Ive

Entity linking involves aligning textual mentions of named entities to their corresponding entries in a knowledge base. Entity linking systems often exploit relations between textual mentions in a document (e.g., coreference) to decide if…

Computation and Language · Computer Science 2018-05-01 Phong Le , Ivan Titov

In database management, record linkage aims to identify multiple records that correspond to the same individual. This task can be treated as a clustering problem, in which a latent entity is associated with one or more noisy database…

Methodology · Statistics 2021-03-02 Brenda Betancourt , Juan Sosa , Abel Rodríguez

Linking information across sources is fundamental to a variety of analyses in social science, business, and government. While large language models (LLMs) offer enormous promise for improving record linkage in noisy datasets, in many…

Computation and Language · Computer Science 2024-06-26 Abhishek Arora , Melissa Dell