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This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

Many datasets take the form of a bipartite graph where two types of nodes are connected by relationships, like the movies watched by a user or the tags associated with a file. The partitioning of the bipartite graph could be used to fasten…

Information Retrieval · Computer Science 2021-10-01 Gaëlle Candel , David Naccache

Multi-swarm particle optimisation algorithms are gaining popularity due to their ability to locate multiple optimum points concurrently. In this family of algorithms, clustering-based multi-swarm algorithms are among the most effective…

Neural and Evolutionary Computing · Computer Science 2025-11-25 Yves Matanga , Yanxia Sun , Zenghui Wang

We propose an algorithm for simultaneously detecting and locating changepoints in a time series, and a framework for predicting the distribution of the next point in the series. The kernel of the algorithm is a system of equations that…

Applications · Statistics 2008-12-09 Allen B. Downey

Embeddings mapping high-dimensional discrete input to lower-dimensional continuous vector spaces have been widely adopted in machine learning applications as a way to capture domain semantics. Interviewing 13 embedding users across…

Human-Computer Interaction · Computer Science 2022-03-07 Angie Boggust , Brandon Carter , Arvind Satyanarayan

In evolutionary multi-objective optimization, the indicator-based subset selection problem involves finding a subset of points that maximizes a given quality indicator. Local search is an effective approach for obtaining a high-quality…

Neural and Evolutionary Computing · Computer Science 2025-03-07 Keisuke Korogi , Ryoji Tanabe

Dynamic networks, especially those representing social networks, undergo constant evolution of their community structure over time. Nodes can migrate between different communities, communities can split into multiple new communities,…

Social and Information Networks · Computer Science 2017-08-29 Timothy La Fond , Geoffrey Sanders , Christine Klymko , Van Emden Henson

Community detection is a discovery tool used by network scientists to analyze the structure of real-world networks. It seeks to identify natural divisions that may exist in the input networks that partition the vertices into coherent…

Social and Information Networks · Computer Science 2019-09-24 Neda Zarayeneh , Ananth Kalyanaraman

Network representations have been effectively employed to analyze complex systems across various areas and applications, leading to the development of network science as a core tool to study systems with multiple components and complex…

Neurons and Cognition · Quantitative Biology 2023-07-25 ItaloIvo Lima Dias Pinto , Javier Omar Garcia , Kanika Bansal

Community detection is a fundamental task in graph analysis, with methods often relying on fitting models like the Stochastic Block Model (SBM) to observed networks. While many algorithms can accurately estimate SBM parameters when the…

Machine Learning · Statistics 2025-06-05 Leonardo Martins Bianco , Christine Keribin , Zacharie Naulet

Community detection is the task of clustering objects based on their pairwise relationships. Most of the model-based community detection methods, such as the stochastic block model and its variants, are designed for networks with binary…

Machine Learning · Statistics 2024-12-06 Xiang Li , Yunpeng Zhao , Qing Pan , Ning Hao

In this paper, we study the problem of spatial link discovery (LD), focusing primarily on topological and proximity relations between spatial objects. The problem is timely due to the large number of sources that generate spatial data,…

Databases · Computer Science 2018-03-06 Georgios Santipantakis , Christos Doulkeridis , George A. Vouros , Akrivi Vlachou

In forecasting multiple time series, accounting for the individual features of each sequence can be challenging. To address this, modern deep learning methods for time series analysis combine a shared (global) model with local layers,…

Machine Learning · Computer Science 2025-02-14 Luca Butera , Giovanni De Felice , Andrea Cini , Cesare Alippi

We propose a new clustering algorithm, Extended Affinity Propagation, based on pairwise similarities. Extended Affinity Propagation is developed by modifying Affinity Propagation such that the desirable features of Affinity Propagation,…

Machine Learning · Computer Science 2019-04-17 Rayyan Ahmad Khan , Rana Ali Amjad , Martin Kleinsteuber

We address the classical problem of hierarchical clustering, but in a framework where one does not have access to a representation of the objects or their pairwise similarities. Instead, we assume that only a set of comparisons between…

Machine Learning · Statistics 2019-06-13 Debarghya Ghoshdastidar , Michaël Perrot , Ulrike von Luxburg

In this paper a simple but efficient real-time detecting algorithm is proposed for tracking community structure of dynamic networks. Community structure is intuitively characterized as divisions of network nodes into subgroups, within which…

Social and Information Networks · Computer Science 2014-07-11 Jiaxing Shang , Lianchen Liu , Feng Xie , Zhen Chen , Jiajia Miao , Xuelin Fang , Cheng Wu

In this paper we present a novel algorithm and efficient data structure for anomaly detection based on temporal data. Time-series data are represented by a sequence of symbolic time intervals, describing increasing and decreasing trends, in…

Data Structures and Algorithms · Computer Science 2019-11-05 Roni Mateless , Michael Segal , Robert Moskovitch

Bipartite networks provide an effective resource for representing, characterizing, and modeling several abstract and real-world systems and structures involving binary relations, which include food webs, social interactions, and…

Social and Information Networks · Computer Science 2024-02-01 Alexandre Benatti , Luciano da F. Costa

In this paper, we define locally matchable subsets of a group which is derived from the concept of matchings in groups and used as a tool to give alternative proofs for existing results in matching theory. We also give the linear analogue…

Combinatorics · Mathematics 2018-08-08 Mohsen Aliabadi , Mano Vikash Janardhanan

Entity alignment has always had significant uses within a multitude of diverse scientific fields. In particular, the concept of matching entities across networks has grown in significance in the world of social science as communicative…

Social and Information Networks · Computer Science 2020-04-21 James Flamino , Christopher Abriola , Ben Zimmerman , Zhongheng Li , Joel Douglas