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Topological Data Analysis (TDA) is a rigorous framework that borrows techniques from geometric and algebraic topology, category theory, and combinatorics in order to study the "shape" of such complex high-dimensional data. Research in this…

Algebraic Topology · Mathematics 2022-04-15 R. W. R. Darling , John A. Emanuello , Emilie Purvine , Ahmad Ridley

This paper presents a software component that generates a user interface structure for populating a domain ontology. The core of this work is an algorithm that takes an ontology and returns a structure describing the user interface. The…

Software Engineering · Computer Science 2024-08-06 Bruno Szilagyi , Edelweis Rohrer , Regina Motz

Quality factors like passive voice or sentence length are commonly used in research and practice to evaluate the quality of natural language requirements since they indicate defects in requirements artifacts that potentially propagate to…

Software Engineering · Computer Science 2025-01-08 Julian Frattini , Lloyd Montgomery , Jannik Fischbach , Michael Unterkalmsteiner , Daniel Mendez , Davide Fucci

Inductive link prediction -- where entities during training and inference stages can be different -- has shown great potential for completing evolving knowledge graphs in an entity-independent manner. Many popular methods mainly focus on…

Artificial Intelligence · Computer Science 2024-08-22 Jie Wang , Hanzhu Chen , Qitan Lv , Zhihao Shi , Jiajun Chen , Huarui He , Hongtao Xie , Defu Lian , Enhong Chen , Feng Wu

Generic ontologies were introduced as an extension (Generic DOL) of the Distributed Ontology, Modeling and Specification Language, DOL, with the aim to provide a language for Generic Ontology Design Patterns. In this paper we present a…

Logic in Computer Science · Computer Science 2019-06-17 Mihai Codescu , Bernd Krieg-Brückner , Till Mossakowski

Despite the large number of patients in Electronic Health Records (EHRs), the subset of usable data for modeling outcomes of specific phenotypes are often imbalanced and of modest size. This can be attributed to the uneven coverage of…

Machine Learning · Computer Science 2021-03-25 Mohamed Ghalwash , Zijun Yao , Prithwish Chakraborty , James Codella , Daby Sow

This comprehensive study conducts an in-depth analysis of existing COVID-19 ontologies, scrutinizing their objectives, classifications, design methodologies, and domain focal points. The study is conducted through a dual-stage approach,…

Digital Libraries · Computer Science 2023-10-31 Debanjali Bain , Biswanath Dutta

Ontologies provide formal representation of knowledge shared within Semantic Web applications. Ontology learning involves the construction of ontologies from a given corpus. In the past years, ontology learning has traversed through shallow…

Information Retrieval · Computer Science 2024-06-18 Rick Du , Huilong An , Keyu Wang , Weidong Liu

To provide a foundation for conceptual modeling, ontologies have been introduced to specify the entities, the existences of which are acknowledged in the model. Ontologies are essential components as mechanisms to model a portion of reality…

Artificial Intelligence · Computer Science 2020-07-21 Sabah Al-Fedaghi

Current language model evaluations measure what models know under ideal conditions but not how robustly they know it under realistic stress. Static benchmarks like MMLU and TruthfulQA cannot distinguish a model that lacks knowledge from one…

Artificial Intelligence · Computer Science 2026-04-07 Rahul Baxi

This paper discusses the representation of ontologies in the first-order logical environment {\ttfamily FOLE}. An ontology defines the primitives with which to model the knowledge resources for a community of discourse. These primitives…

Logic in Computer Science · Computer Science 2023-04-24 Robert E. Kent

The emergence of instruction-tuned large language models (LLMs) has advanced the field of dialogue systems, enabling both realistic user simulations and robust multi-turn conversational agents. However, existing research often evaluates…

Computation and Language · Computer Science 2025-07-22 Chalamalasetti Kranti , Sherzod Hakimov , David Schlangen

Trust has stood out more than ever in the light of recent innovations. Some examples are advances in artificial intelligence that make machines more and more humanlike, and the introduction of decentralized technologies (e.g. blockchains),…

Artificial Intelligence · Computer Science 2026-02-10 Glenda Amaral , Tiago Prince Sales , Riccardo Baratella , Daniele Porello , Renata Guizzardi , Giancarlo Guizzardi

The development of domain ontological models, though being a mature research arena backed by well-established methodologies, still suffer from two key shortcomings. Firstly, the issues concerning the semantic persistency of ontology…

Artificial Intelligence · Computer Science 2022-08-30 Mayukh Bagchi

This works considers challenges of building and usage a formal knowledge base (model), which unites the ATT&CK, CAPEC, CWE, CVE security enumerations. The proposed model can be used to learn relations between attack techniques, attack…

Cryptography and Security · Computer Science 2021-12-09 Andrei Brazhuk

With the development of large language models (LLMs), numerous studies integrate LLMs through operator-like components to enhance relational data processing tasks, e.g., filters with semantic predicates, knowledge-augmented table…

Databases · Computer Science 2026-04-29 Yunxiang Su , Tianjing Zeng , Zhongjun Ding , Yin Lin , Rong Zhu , Zhewei Wei , Bolin Ding , Jingren Zhou

This work presents an ontology-integrated large language model (LLM) framework for chemical engineering that unites structured domain knowledge with generative reasoning. The proposed pipeline aligns model training and inference with the…

Machine Learning · Computer Science 2025-12-15 Crystal Su , Kuai Yu , Jingrui Zhang , Mingyuan Shao , Daniel Bauer

We introduce ontology-to-tools compilation as a proof-of-principle mechanism for coupling large language models (LLMs) with formal domain knowledge. Within The World Avatar (TWA), ontological specifications are compiled into executable tool…

Artificial Intelligence · Computer Science 2026-02-04 Xiaochi Zhou , Patrick Bulter , Changxuan Yang , Simon D. Rihm , Thitikarn Angkanaporn , Jethro Akroyd , Sebastian Mosbach , Markus Kraft

Accurate prediction of protein function is essential for elucidating molecular mechanisms and advancing biological and therapeutic discovery. Yet experimental annotation lags far behind the rapid growth of protein sequence data.…

Biomolecules · Quantitative Biology 2026-03-27 Mehmet Efe Akça , Gökçe Uludoğan , Arzucan Özgür , İnci M. Baytaş

Much of the current research and development in the field of automated reasoning builds on the infrastructure provided by the TPTP World. The TPTP language for logical formulae is central to the far-reaching adoption of the TPTP World. This…

Logic in Computer Science · Computer Science 2025-07-08 Daniel Ranalter , Cezary Kaliszyk , Florian Rabe , Geoff Sutcliffe
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